Search result

BaseInfo

ncRNA ID novel_zma_miR5587
Species Zea mays
Class miRNA
Genome position Chr1:269020812-269020922 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647387;SRR2647391
Length 24
Mature sequence(if miRNA) 88 - GUGCUCAUUUUUACCCUUAGUUGU - 111
Stem-loop(if miRNA) --               C               -                 -  U U
  GUGCUCAUUUUUACC UUAGUUGUGUUUUUU CUCAGUUUUGCCCUUCU GU C A
  ||||||||||||||| ||||||||||||||| ||||||||||||||||| || |
  CACGAGUAAAAAUGG AAUCAACACAAAAAA GAGUCAAAACGGGAAGG CA G U
CA               -               C                 U  C A
Stem-loop sequence GUGCUCAUUUUUACCCUUAGUUGUGUUUUUUCUCAGUUUUGCCCUUCUGUUCUAUAGCACUGGAAGGGCAAAACUGAGCAAAAAACACAACUAAGGUAAAAAUGAGCACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061928.1
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  ||||||||||||||||||||||||
targets:553   ACAACUAAGGGUAAAAAUGAGCAC   576

0.0 Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds NA coding protein psRNATarget
XM_008679472.2
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  ||=|||||||||||||||*|||||
targets:2663   ACGACUAAGGGUAAAAAUAAGCAC   2686

1.5 PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679473.2
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  ||=|||||||||||||||*|||||
targets:2866   ACGACUAAGGGUAAAAAUAAGCAC   2889

1.5 PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA NA coding protein psRNATarget
BT088229.1
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  |==||||||||||||||||||*|*
targets:1443   AUGACUAAGGGUAAAAAUGAGGAA   1466

2.5 Zea mays full-length cDNA clone ZM_BFc0083G18 mRNA, complete cds NA coding protein psRNATarget
BT062332.1
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  |==||||||||||||||||||*|*
targets:1761   AUGACUAAGGGUAAAAAUGAGGAA   1784

2.5 Zea mays full-length cDNA clone ZM_BFb0282G11 mRNA, complete cds NA coding protein psRNATarget
BT055615.2
ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1
  ||=|||||*|||||||*|||||||
targets:108   ACGACUAAAGGUAAAACUGAGCAC   131

2.5 Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds NA coding protein psRNATarget