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BaseInfo

ncRNA ID novel_zma_miR5582
Species Zea mays
Class miRNA
Genome position Chr1:300991440-300991535 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - UGUUAACUCCGUAGCAACGCACGG - 24
Stem-loop(if miRNA) --                                 ----------G      U
  GUGCGUUGCUACGGAGUUAACAUAUAAUGAUAA           AUAUAU G
  |||||||||||||||||||||||||||||||||           ||||||
  CACGCAACGAUGCCUCAAUUGUAUAUUGCUAUU           UAUGUA A
GG                                 AAUUACAAAGA      G
Stem-loop sequence GUGCGUUGCUACGGAGUUAACAUAUAAUGAUAAGAUAUAUUGAGAUGUAUAGAAACAUUAAUUAUCGUUAUAUGUUAACUCCGUAGCAACGCACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ106575.1
ncRNA:24   GGCACGCAACGAUGCCUCAAUUGU   1
  |||||||||||||||||||*||||
targets:85   CCGUGCGUUGCUACGGAGUCAACA   108

1.5 TSA: Zea mays contig42233, mRNA sequence NA coding protein psRNATarget
EU940751.1
ncRNA:24   GGCACGCAACGAUGCCUCAAUUGU   1
  |||||||||||||||||||*||||
targets:382   CCGUGCGUUGCUACGGAGUGAACA   405

1.5 Zea mays clone 1061917 mRNA sequence NA coding protein psRNATarget
EU947159.1
ncRNA:24   GGCACGCAACGAUGCCUCAAUUGU   1
  ||||||*||||||||||||*||||
targets:586   CCGUGCUUUGCUACGGAGUCAACA   609

2.5 Zea mays clone 330083 mRNA sequence NA coding protein psRNATarget