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BaseInfo

ncRNA ID novel_zma_miR5578
Species Zea mays
Class miRNA
Genome position Chr1:275862700-275862872 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647386;SRR2647390;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - AUAAUCCGACUACAUUUAAUACCU - 24
Stem-loop(if miRNA) --                                                 -  A  AU             -CG   U        G
  AUAAUCCGACUACAUUUAAUACCUGGAACGGAGGUUCAAACAUUCGAUG GG CA  GGCUAAAUUUUAG   GGG GUAACCGG G
  ||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||   ||| |||||||| U
  UAUUAGGCUGAUGUAAAUUAUGGGCCUUGCCUCCAAGUUUGUAAGCUAU CC GU  CCGAUUUAAAAUC   CCC CAUUGGUU G
AA                                                 A  -  CC             AAA   -        U
Stem-loop sequence AUAAUCCGACUACAUUUAAUACCUGGAACGGAGGUUCAAACAUUCGAUGGGACAAUGGCUAAAUUUUAGCGGGGUGUAACCGGGGUGUUUGGUUACCCCAAACUAAAAUUUAGCCCCUGCCAUAUCGAAUGUUUGAACCUCCGUUCCGGGUAUUAAAUGUAGUCGGAUUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008667260.2
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:2024   GGGUAUUAAAUGUAGUCGGAUUAU   2047

0.0 PREDICTED: Zea mays allene oxide synthase 1, chloroplastic (LOC103644066), mRNA NA coding protein psRNATarget
NM_001152444.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:875   GGGUAUUAAAUGUAGUCGGAUUAU   898

0.0 Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA NA coding protein psRNATarget
BT054237.2
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:875   GGGUAUUAAAUGUAGUCGGAUUAU   898

0.0 Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds NA coding protein psRNATarget
EU968043.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:1456   GGGUAUUAAAUGUAGUCGGAUUAU   1479

0.0 Zea mays clone 313378 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU941151.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:792   GGGUAUUAAAUGUAGUCGGAUUAU   815

0.0 Zea mays clone 1341984 mRNA sequence NA coding protein psRNATarget
HI403388.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67

0.0 Sequence 1513 from Patent EP2074227 NA coding protein psRNATarget
LQ235518.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67

0.0 Sequence 1513 from Patent EP2985353 NA coding protein psRNATarget
JB163849.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||||||||
targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67

0.0 Sequence 1513 from Patent EP2559767 NA coding protein psRNATarget
LQ241905.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  *|||||||||||||||||||||||
targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32

0.0 Sequence 7900 from Patent EP2985353 NA coding protein psRNATarget
HI409775.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  *|||||||||||||||||||||||
targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32

0.0 Sequence 7900 from Patent EP2074227 NA coding protein psRNATarget
JB170236.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  *|||||||||||||||||||||||
targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32

0.0 Sequence 7900 from Patent EP2559767 NA coding protein psRNATarget
XM_020544947.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =*||||||||||||||||||||||
targets:2781   GAGUAUUAAAUGUAGUCGGAUUAU   2804

0.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA NA coding protein psRNATarget
BT065587.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =*||||||||||||||||||||||
targets:375   GAGUAUUAAAUGUAGUCGGAUUAU   398

0.0 Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds NA coding protein psRNATarget
XM_008656975.2
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =||||||||||*||||||||||||
targets:696   GGGUAUUAAAUAUAGUCGGAUUAU   719

1.5 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA NA coding protein psRNATarget
EU949360.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =||||||||||*||||||||||||
targets:702   GGGUAUUAAAUAUAGUCGGAUUAU   725

1.5 Zea mays clone 403134 mRNA sequence NA coding protein psRNATarget
BT036886.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||*|||||
targets:1221   GGGUAUUAAAUGUAGUCGAAUUAU   1244

1.5 Zea mays full-length cDNA clone ZM_BFb0146B11 mRNA, complete cds NA coding protein psRNATarget
NM_001139394.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||*|||||
targets:1221   GGGUAUUAAAUGUAGUCGAAUUAU   1244

1.5 Zea mays uncharacterized LOC100194359 (pco078090), mRNA NA coding protein psRNATarget
AY104898.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||||||*|||||
targets:1229   GGGUAUUAAAUGUAGUCGAAUUAU   1252

1.5 Zea mays PCO078090 mRNA sequence NA coding protein psRNATarget
JB163851.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||*|||||||||
targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67

1.5 Sequence 1515 from Patent EP2559767 NA coding protein psRNATarget
LQ235520.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||*|||||||||
targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67

1.5 Sequence 1515 from Patent EP2985353 NA coding protein psRNATarget
HI403390.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =|||||||||||||*|||||||||
targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67

1.5 Sequence 1515 from Patent EP2074227 NA coding protein psRNATarget
HI403332.1
ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1
  =|||-||||||||||||||*|||||
targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67

1.5 Sequence 1457 from Patent EP2074227 NA coding protein psRNATarget
JB163793.1
ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1
  =|||-||||||||||||||*|||||
targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67

1.5 Sequence 1457 from Patent EP2559767 NA coding protein psRNATarget
LQ235462.1
ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1
  =|||-||||||||||||||*|||||
targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67

1.5 Sequence 1457 from Patent EP2985353 NA coding protein psRNATarget
EZ071020.1
ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1
  =**|=*|||||||||||*||||||
targets:30   GCUUGCUAAAUGUAGUCUGAUUAU   53

2.5 TSA: Zea mays contig06657, mRNA sequence NA coding protein psRNATarget