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BaseInfo

ncRNA ID	novel_zma_miR5578
Species	Zea mays
Class	miRNA
Genome position	Chr1:275862700-275862872 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647386;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - AUAAUCCGACUACAUUUAAUACCU - 24
Stem-loop(if miRNA)	--                                                 -  A  AU             -CG   U        G   AUAAUCCGACUACAUUUAAUACCUGGAACGGAGGUUCAAACAUUCGAUG GG CA  GGCUAAAUUUUAG   GGG GUAACCGG G   ||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||   ||| |||||||| U   UAUUAGGCUGAUGUAAAUUAUGGGCCUUGCCUCCAAGUUUGUAAGCUAU CC GU  CCGAUUUAAAAUC   CCC CAUUGGUU G AA                                                 A  -  CC             AAA   -        U
Stem-loop sequence	AUAAUCCGACUACAUUUAAUACCUGGAACGGAGGUUCAAACAUUCGAUGGGACAAUGGCUAAAUUUUAGCGGGGUGUAACCGGGGUGUUUGGUUACCCCAAACUAAAAUUUAGCCCCUGCCAUAUCGAAUGUUUGAACCUCCGUUCCGGGUAUUAAAUGUAGUCGGAUUAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667260.2	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:2024   GGGUAUUAAAUGUAGUCGGAUUAU   2047 Target Full Sequence	0.0	PREDICTED: Zea mays allene oxide synthase 1, chloroplastic (LOC103644066), mRNA	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:875   GGGUAUUAAAUGUAGUCGGAUUAU   898 Target Full Sequence	0.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:875   GGGUAUUAAAUGUAGUCGGAUUAU   898 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
EU968043.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:1456   GGGUAUUAAAUGUAGUCGGAUUAU   1479 Target Full Sequence	0.0	Zea mays clone 313378 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU941151.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:792   GGGUAUUAAAUGUAGUCGGAUUAU   815 Target Full Sequence	0.0	Zea mays clone 1341984 mRNA sequence	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67 Target Full Sequence	0.0	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67 Target Full Sequence	0.0	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||||||||||||||| targets:44   GGGUAUUAAAUGUAGUCGGAUUAU   67 Target Full Sequence	0.0	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241905.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   *||||||||||||||||||||||| targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32 Target Full Sequence	0.0	Sequence 7900 from Patent EP2985353	NA	coding protein	psRNATarget
HI409775.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   *||||||||||||||||||||||| targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32 Target Full Sequence	0.0	Sequence 7900 from Patent EP2074227	NA	coding protein	psRNATarget
JB170236.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   *||||||||||||||||||||||| targets:9   CGGUAUUAAAUGUAGUCGGAUUAU   32 Target Full Sequence	0.0	Sequence 7900 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =*|||||||||||||||||||||| targets:2781   GAGUAUUAAAUGUAGUCGGAUUAU   2804 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065587.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =*|||||||||||||||||||||| targets:375   GAGUAUUAAAUGUAGUCGGAUUAU   398 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||*|||||||||||| targets:696   GGGUAUUAAAUAUAGUCGGAUUAU   719 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =||||||||||*|||||||||||| targets:702   GGGUAUUAAAUAUAGUCGGAUUAU   725 Target Full Sequence	1.5	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
BT036886.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||||||*||||| targets:1221   GGGUAUUAAAUGUAGUCGAAUUAU   1244 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0146B11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139394.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||||||*||||| targets:1221   GGGUAUUAAAUGUAGUCGAAUUAU   1244 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194359 (pco078090), mRNA	NA	coding protein	psRNATarget
AY104898.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||||||*||||| targets:1229   GGGUAUUAAAUGUAGUCGAAUUAU   1252 Target Full Sequence	1.5	Zea mays PCO078090 mRNA sequence	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||*||||||||| targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67 Target Full Sequence	1.5	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235520.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||*||||||||| targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67 Target Full Sequence	1.5	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =|||||||||||||*||||||||| targets:44   GGGUAUUAAAUGUAAUCGGAUUAU   67 Target Full Sequence	1.5	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
HI403332.1	ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1   =|||-||||||||||||||*||||| targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67 Target Full Sequence	1.5	Sequence 1457 from Patent EP2074227	NA	coding protein	psRNATarget
JB163793.1	ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1   =|||-||||||||||||||*||||| targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67 Target Full Sequence	1.5	Sequence 1457 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235462.1	ncRNA:24   UCCA-UAAUUUACAUCAGCCUAAUA   1   =|||-||||||||||||||*||||| targets:43   GGGUUAUUAAAUGUAGUCGAAUUAU   67 Target Full Sequence	1.5	Sequence 1457 from Patent EP2985353	NA	coding protein	psRNATarget
EZ071020.1	ncRNA:24   UCCAUAAUUUACAUCAGCCUAAUA   1   =**|=*|||||||||||*|||||| targets:30   GCUUGCUAAAUGUAGUCUGAUUAU   53 Target Full Sequence	2.5	TSA: Zea mays contig06657, mRNA sequence	NA	coding protein	psRNATarget