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BaseInfo

ncRNA ID novel_zma_miR5577
Species Zea mays
Class miRNA
Genome position Chr10:116498554-116498610 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 34 - AUUUUUCUUCUACUAAUAAUUGGA - 57
Stem-loop(if miRNA) --A   UU         A  A   GA  C
   UUU  CUUCUACUA UA UUG  GG G
   |||  ||||||||| || |||  ||
   GAG  GAAGGUGAU AU GAC  CC G
GAG   GG         -  C   AC  G
Stem-loop sequence AUUUUUCUUCUACUAAUAAUUGGAGGCGGGCCCACAGCUAUAGUGGAAGGGGAGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675162.2
ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1
  ||||||||||||||||*|||||||
targets:2266   UCCAAUUAUUAGUAGAUGAAAAAU   2289

1.5 PREDICTED: Zea mays uncharacterized LOC100502382 (LOC100502382), transcript variant X2, mRNA NA coding protein psRNATarget
AY105344.1
ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1
  ||||||||||||||||*|||||||
targets:465   UCCAAUUAUUAGUAGAUGAAAAAU   488

1.5 Zea mays PCO063249 mRNA sequence NA coding protein psRNATarget
XM_020543103.1
ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1
  *==||||=|||||||||*||||||
targets:123   AUUAAUUGUUAGUAGAAUAAAAAU   146

2.5 PREDICTED: Zea mays uncharacterized LOC109941864 (LOC109941864), mRNA NA coding protein psRNATarget
NM_001151318.1
ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1
  ||=---=|||=*|||||||||||||||
targets:1653   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1679

2.0 Zea mays VHS domain-containing protein (si707082c03b), mRNA NA coding protein psRNATarget
EU970857.1
ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1
  ||=---=|||=*|||||||||||||||
targets:1653   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1679

2.0 Zea mays clone 352415 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT053904.1
ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1
  ||=---=|||=*|||||||||||||||
targets:1632   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1658

2.0 Zea mays full-length cDNA clone ZM_BFc0038G01 mRNA, complete cds NA coding protein psRNATarget
EZ103346.1
ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1
  ***|||*||||*||||||||||||
targets:133   AAAAAUAAUUAAUAGAAGAAAAAU   156

2.5 TSA: Zea mays contig39003, mRNA sequence NA coding protein psRNATarget