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BaseInfo

ncRNA ID	novel_zma_miR5577
Species	Zea mays
Class	miRNA
Genome position	Chr10:116498554-116498610 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	34 - AUUUUUCUUCUACUAAUAAUUGGA - 57
Stem-loop(if miRNA)	--A   UU         A  A   GA  C    UUU  CUUCUACUA UA UUG  GG G    |||  ||||||||| || |||  ||    GAG  GAAGGUGAU AU GAC  CC G GAG   GG         -  C   AC  G
Stem-loop sequence	AUUUUUCUUCUACUAAUAAUUGGAGGCGGGCCCACAGCUAUAGUGGAAGGGGAGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008675162.2	ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1   ||||||||||||||||*||||||| targets:2266   UCCAAUUAUUAGUAGAUGAAAAAU   2289 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100502382 (LOC100502382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY105344.1	ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1   ||||||||||||||||*||||||| targets:465   UCCAAUUAUUAGUAGAUGAAAAAU   488 Target Full Sequence	1.5	Zea mays PCO063249 mRNA sequence	NA	coding protein	psRNATarget
XM_020543103.1	ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1   *==||||=|||||||||*|||||| targets:123   AUUAAUUGUUAGUAGAAUAAAAAU   146 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941864 (LOC109941864), mRNA	NA	coding protein	psRNATarget
NM_001151318.1	ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1   ||=---=|||=*||||||||||||||| targets:1653   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1679 Target Full Sequence	2.0	Zea mays VHS domain-containing protein (si707082c03b), mRNA	NA	coding protein	psRNATarget
EU970857.1	ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1   ||=---=|||=*||||||||||||||| targets:1653   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1679 Target Full Sequence	2.0	Zea mays clone 352415 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT053904.1	ncRNA:24   AGG---UUAAUAAUCAUCUUCUUUUUA   1   ||=---=|||=*||||||||||||||| targets:1632   UCUCAGGAUUGAUAGUAGAAGAAAAAU   1658 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038G01 mRNA, complete cds	NA	coding protein	psRNATarget
EZ103346.1	ncRNA:24   AGGUUAAUAAUCAUCUUCUUUUUA   1   ***|||*||||*|||||||||||| targets:133   AAAAAUAAUUAAUAGAAGAAAAAU   156 Target Full Sequence	2.5	TSA: Zea mays contig39003, mRNA sequence	NA	coding protein	psRNATarget