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BaseInfo

ncRNA ID novel_zma_miR5566
Species Zea mays
Class miRNA
Genome position Chr5:178317697-178317832 [+]
Reference genome RefGen_v4
Source SRR1618883;SRR4237222;SRR4237224
Length 24
Mature sequence(if miRNA) 113 - UUGGGGUAGAACCGAACAUGGCCU - 136
Stem-loop(if miRNA) --   -         -AU UU              C GA         UAC  A UAGAGGAGAUUUUGA
  GCU UGUUCGGUU   U  CAAUCCAUAUGGAU G  GGGGAUUGA   AG U               C
  ||| |||||||||   |  |||||||||||||| |  |||||||||   || |               U
  CGG ACAAGCCAA   G  GUUAGGUAUACCUA C  CCCCUAACU   CC C               U
UC   U         GAU GG              A UC         --C  - CAAAAUUAGGGAUCA
Stem-loop sequence GCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUCGGAGGGGAUUGAUACAGAUUAGAGGAGAUUUUGACUUACUAGGGAUUAAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAUGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658561.2
ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1
  |||=||||||||||||||||=|||
targets:209   AGGUCAUGUUCGGUUCUACCUCAA   232

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EZ081763.1
ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1
  |||=||||||||||||||||*|||
targets:43   AGGUCAUGUUCGGUUCUACCACAA   66

1.5 TSA: Zea mays contig17404, mRNA sequence NA coding protein psRNATarget
EZ068230.1
ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1
  |**|=|||||||||||||*|||||
targets:28   ACACUAUGUUCGGUUCUAGCCCAA   51

1.5 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget