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BaseInfo

ncRNA ID	novel_zma_miR5566
Species	Zea mays
Class	miRNA
Genome position	Chr5:178317697-178317832 [+]
Reference genome	RefGen_v4
Source	SRR1618883;SRR4237222;SRR4237224
Length	24
Mature sequence(if miRNA)	113 - UUGGGGUAGAACCGAACAUGGCCU - 136
Stem-loop(if miRNA)	--   -         -AU UU              C GA         UAC  A UAGAGGAGAUUUUGA   GCU UGUUCGGUU   U  CAAUCCAUAUGGAU G  GGGGAUUGA   AG U               C   ||| |||||||||   |  |||||||||||||| |  |||||||||   || |               U   CGG ACAAGCCAA   G  GUUAGGUAUACCUA C  CCCCUAACU   CC C               U UC   U         GAU GG              A UC         --C  - CAAAAUUAGGGAUCA
Stem-loop sequence	GCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUCGGAGGGGAUUGAUACAGAUUAGAGGAGAUUUUGACUUACUAGGGAUUAAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAUGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1   |||=||||||||||||||||=||| targets:209   AGGUCAUGUUCGGUUCUACCUCAA   232 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EZ081763.1	ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1   |||=||||||||||||||||*||| targets:43   AGGUCAUGUUCGGUUCUACCACAA   66 Target Full Sequence	1.5	TSA: Zea mays contig17404, mRNA sequence	NA	coding protein	psRNATarget
EZ068230.1	ncRNA:24   UCCGGUACAAGCCAAGAUGGGGUU   1   |**|=|||||||||||||*||||| targets:28   ACACUAUGUUCGGUUCUAGCCCAA   51 Target Full Sequence	1.5	TSA: Zea mays contig03865, mRNA sequence	NA	coding protein	psRNATarget