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BaseInfo

ncRNA ID novel_zma_miR5564
Species Zea mays
Class miRNA
Genome position Chr9:7235911-7235980 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 47 - AAGAUCUAUGGCGCCGACCCCCAG - 70
Stem-loop(if miRNA) --                     CA  CAACACGG
  AAGAUCUAUGGCGCCGACCCC  GU        C
  |||||||||||||||||||||  ||        A
  UUCUAGAUACCGCGGCUGGGG  CG        G
GG                     -A  UUGAAACU
Stem-loop sequence AAGAUCUAUGGCGCCGACCCCCAGUCAACACGGCAGUCAAAGUUGCAGGGGUCGGCGCCAUAGAUCUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668233.1
ncRNA:24   GAC--CCCCAGCCGCGGUAUCUAGAA   1
  |||--|||||||||||||||||||||
targets:179   CUGCGGGGGUCGGCGCCAUAGAUCUU   204

0.0 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  **||||||||||||||*|||||||
targets:241   AGGGGGGUCGGCGCCACAGAUCUU   264

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |*||||||||||||||||||||||
targets:61   CAGGGGGUCGGCGCCAUAGAUCUU   84

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |*||||||||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |*||||||||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ***|||||||||||||||||||||
targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312

0.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_020538144.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |*|*||||||||||||||||||||
targets:103   CAGAGGGUCGGCGCCAUAGAUCUU   126

0.0 PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA NA coding protein psRNATarget
XM_020549155.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |*|*|||||||||||||=||||||
targets:5   CAGAGGGUCGGCGCCAUGGAUCUU   28

1.5 PREDICTED: Zea mays extensin-like (LOC109944402), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   GACC----CCC-AGCCGCGGUAUCUAGAA   1
  *|||----|*|-|||||||||||||||||
targets:123   AUGGAACCGAGCUCGGCGCCAUAGAUCUU   151

3.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  =**|*|*|||||||||||||||||
targets:1220   UCCGAGCUCGGCGCCAUAGAUCUU   1243

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   GACC----CCC-AGCCGCGGUAUCUAGAA   1
  *|||----|*|-|||||||||||||||||
targets:121   AUGGAACCGAGCUCGGCGCCAUAGAUCUU   149

3.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  =**|*|*|||||||||||||||||
targets:1218   UCCGAGCUCGGCGCCAUAGAUCUU   1241

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   GACC----CCC-AGCCGCGGUAUCUAGAA   1
  *|||----|*|-|||||||||||||||||
targets:181   AUGGAACCGAGCUCGGCGCCAUAGAUCUU   209

3.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  =**|*|*|||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   GACC----CCC-AGCCGCGGUAUCUAGAA   1
  *|||----|*|-|||||||||||||||||
targets:181   AUGGAACCGAGCUCGGCGCCAUAGAUCUU   209

3.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  =**|*|*|||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
EU948532.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ****||*||||||=||||||||||
targets:433   ACACGGCUCGGCGUCAUAGAUCUU   456

2.5 Zea mays clone 379687 mRNA sequence NA coding protein psRNATarget
XM_020543999.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ****||*||||||=||||||||||
targets:928   ACACGGCUCGGCGUCAUAGAUCUU   951

2.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544000.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ****||*||||||=||||||||||
targets:934   ACACGGCUCGGCGUCAUAGAUCUU   957

2.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  =**|*|*|||||||||||||||||
targets:780   UCCGAGCUCGGCGCCAUAGAUCUU   803

1.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
JB166443.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ***|***|||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
HI405982.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ***|***|||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
LQ238112.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  ***|***|||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

2.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:280   ACACAUCUCGGCGCCAUAGAUCUU   303

2.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *||****|||||||||||||||||
targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24

2.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  **|****|||||||||||||||||
targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25

2.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695

2.0 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:1672   ACACAUCUCGGCGCCAUAGAUCUU   1695

2.0 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:1754   ACACAUCUCGGCGCCAUAGAUCUU   1777

2.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:1779   ACACAUCUCGGCGCCAUAGAUCUU   1802

2.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  *******|||||||||||||||||
targets:1786   ACACAUCUCGGCGCCAUAGAUCUU   1809

2.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
BT068330.1
ncRNA:24   GACCCCCAGCCGCGGUAUCUAGAA   1
  |****|*||||||||||||||=||
targets:721   CCCUAGCUCGGCGCCAUAGAUUUU   744

2.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
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