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BaseInfo

ncRNA ID novel_zma_miR5562
Species Zea mays
Class miRNA
Genome position Chr9:14843422-14843472 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647388;SRR2647390;SRR2647391
Length 24
Mature sequence(if miRNA) 28 - CCAAGAUCUAUGGCGCCGAGCUGU - 51
Stem-loop(if miRNA) --   A  U             CUG
  CCA GA CUAUGGCGCCGAG   U
  ||| || |||||||||||||   G
  GGU CU GAUACCGCGGCUC   U
GC   A  C             AAA
Stem-loop sequence CCAAGAUCUAUGGCGCCGAGCUGUGUAAACUCGGCGCCAUAGCUCAUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948532.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ||=||||||||=||||||||||||
targets:435   ACGGCUCGGCGUCAUAGAUCUUGG   458

1.5 Zea mays clone 379687 mRNA sequence NA coding protein psRNATarget
XM_020543999.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ||=||||||||=||||||||||||
targets:930   ACGGCUCGGCGUCAUAGAUCUUGG   953

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544000.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ||=||||||||=||||||||||||
targets:936   ACGGCUCGGCGUCAUAGAUCUUGG   959

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:282   ACAUCUCGGCGCCAUAGAUCUUGG   305

0.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||||||||||||
targets:128   ACCGAGCUCGGCGCCAUAGAUCUUGG   153

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  **||||||||||||||||||||||
targets:1222   CGAGCUCGGCGCCAUAGAUCUUGG   1245

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||||||||||||
targets:126   ACCGAGCUCGGCGCCAUAGAUCUUGG   151

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  **||||||||||||||||||||||
targets:1220   CGAGCUCGGCGCCAUAGAUCUUGG   1243

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUUGG   211

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  **||||||||||||||||||||||
targets:1279   CGAGCUCGGCGCCAUAGAUCUUGG   1302

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUUGG   211

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  **||||||||||||||||||||||
targets:1279   CGAGCUCGGCGCCAUAGAUCUUGG   1302

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697

0.0 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697

0.0 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:1756   ACAUCUCGGCGCCAUAGAUCUUGG   1779

0.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:1781   ACAUCUCGGCGCCAUAGAUCUUGG   1804

0.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  |||*||||||||||||||||||||
targets:1788   ACAUCUCGGCGCCAUAGAUCUUGG   1811

0.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  **||||||||||||||||||||||
targets:782   CGAGCUCGGCGCCAUAGAUCUUGG   805

0.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
BT068330.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  *=|||||||||||||||||=||||
targets:723   CUAGCUCGGCGCCAUAGAUUUUGG   746

1.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:3   GUACCUCGGCGCCAUAGAUCUUGG   26

0.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:4   GUACCUCGGCGCCAUAGAUCUUGG   27

0.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184

0.0 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184

0.0 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184

0.0 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:165   GUACCUCGGCGCCAUAGAUCUUGG   188

0.0 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:165   GUACCUCGGCGCCAUAGAUCUUGG   188

0.0 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:230   GUACCUCGGCGCCAUAGAUCUUGG   253

0.0 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  ==|*||||||||||||||||||||
targets:937   GUACCUCGGCGCCAUAGAUCUUGG   960

0.0 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
LQ238112.1
ncRNA:24   UGUC--GAGCCGCGGUAUCUAGAACC   1
  ||*|--||||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUUGG   87

0.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
JB166443.1
ncRNA:24   UGUC--GAGCCGCGGUAUCUAGAACC   1
  ||*|--||||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUUGG   87

0.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
HI405982.1
ncRNA:24   UGUC--GAGCCGCGGUAUCUAGAACC   1
  ||*|--||||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUUGG   87

0.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
BT034188.1
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||*|||||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUUGG   779

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--||||||||||||*|||||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUUGG   779

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   UG--UCGAGCCGCGGUAUCUAGAACC   1
  ||--=|*|||||||||||||||||||
targets:289   ACCGGGGUCGGCGCCAUAGAUCUUGG   314

0.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_020538144.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||||||||||||
targets:105   GAGGGUCGGCGCCAUAGAUCUUGG   128

0.0 PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||||||||||||
targets:63   GGGGGUCGGCGCCAUAGAUCUUGG   86

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||||||||||||
targets:183   GGGGGUCGGCGCCAUAGAUCUUGG   206

0.0 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||*|||||||||
targets:243   GGGGGUCGGCGCCACAGAUCUUGG   266

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||||||||||||
targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*|||||||||||||||||||
targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
XM_020549155.1
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =*=|*||||||||||=||||||||
targets:7   GAGGGUCGGCGCCAUGGAUCUUGG   30

1.5 PREDICTED: Zea mays extensin-like (LOC109944402), mRNA NA coding protein psRNATarget
XM_008650464.2
ncRNA:24   UGUCGAGCCGCGGUAUCUAGAACC   1
  =|=|*||||=||||*|||||||||
targets:113   GCGGGUCGGUGCCAGAGAUCUUGG   136

2.5 PREDICTED: Zea mays uncharacterized LOC103629300 (LOC103629300), mRNA NA coding protein psRNATarget
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