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BaseInfo

ncRNA ID	novel_zma_miR5561
Species	Zea mays
Class	miRNA
Genome position	Chr9:19146070-19146196 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	104 - GACUAGCAAGGGAUUUAAUCCCCU - 127
Stem-loop(if miRNA)	--  C   CAA             CUC             U     CC          -AU  U   GA UAG   GGGAUUUAAUCCC   CAAUCCUUUUCGA CCAUU  UGACCGAACA   CC U   || |||   |||||||||||||   ||||||||||||| |||||  ||||||||||   ||   CU AUC   CCCUAAAUUAGGG   GUUAGGGGGAGUU GGUGA  AUUGGCUUGU   GG A AA  A   CUA             AAA             U     UC          AAC  A
Stem-loop sequence	GACUAGCAAGGGAUUUAAUCCCCUCCAAUCCUUUUCGAUCCAUUCCUGACCGAACAAUCCUUAAGGCAAUGUUCGGUUACUAGUGGUUUGAGGGGGAUUGAAAGGGAUUAAAUCCCAUCCUAAUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670947.1	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   |||||||||||||||||*|||||| targets:604   AGGGGAUUAAAUCCCUUCCUAGUC   627 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget
AY111895.1	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   ||*||||||||||=|||||||||| targets:213   AGAGGAUUAAAUCUCUUGCUAGUC   236 Target Full Sequence	1.5	Zea mays CL41465_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008680078.2	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   ||*||||||||||||||*|||||| targets:3138   AGAGGAUUAAAUCCCUUUCUAGUC   3161 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680079.2	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   ||*||||||||||||||*|||||| targets:2799   AGAGGAUUAAAUCCCUUUCUAGUC   2822 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680080.2	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   ||*||||||||||||||*|||||| targets:2799   AGAGGAUUAAAUCCCUUUCUAGUC   2822 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU950695.1	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   |*|||||||||||||||*|||||= targets:610   AAGGGAUUAAAUCCCUUCCUAGUU   633 Target Full Sequence	2.5	Zea mays clone 509921 mRNA sequence	NA	coding protein	psRNATarget
EU947542.1	ncRNA:24   UCCCCUAAUUUAGGGAACGAUCAG   1   |||**||||||||=|||||||||| targets:596   AGGAAAUUAAAUCUCUUGCUAGUC   619 Target Full Sequence	1.5	Zea mays clone 346776 mRNA sequence	NA	coding protein	psRNATarget