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BaseInfo

ncRNA ID	novel_zma_miR5559
Species	Zea mays
Class	miRNA
Genome position	Chr9:22943786-22943839 [+]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - CAUAAAGCUAAGACACUGUGUCUU - 24
Stem-loop(if miRNA)	--CAU      -       U       C      AAAGCU AAGACAC GUGUCUU G      |||||| ||||||| |||||||      UUUUGA UUCUGUG CAUAGAA U UAUUU      A       -       U
Stem-loop sequence	CAUAAAGCUAAGACACUGUGUCUUCGUUAAGAUACGUGUCUUAAGUUUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945043.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||| targets:1023   AAGACACAGUGUCUUAGCUCUAUG   1046 Target Full Sequence	1.5	Zea mays clone 239070 mRNA sequence	NA	coding protein	psRNATarget
XM_020539225.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||| targets:375   AAGACACAGUGUCUUAGCUCUAUG   398 Target Full Sequence	1.5	PREDICTED: Zea mays probable histidine kinase 2 (LOC109940133), mRNA	NA	coding protein	psRNATarget
XM_008668777.2	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||| targets:892   AAGACACAGUGUCUUAGCUCUAUG   915 Target Full Sequence	1.5	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008668776.2	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||| targets:916   AAGACACAGUGUCUUAGCUCUAUG   939 Target Full Sequence	1.5	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547330.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||| targets:1919   AAGACACAGUGUCUUAGCUCUAUG   1942 Target Full Sequence	1.5	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974433.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||* targets:447   AAGACACAGUGUCUUAGCUCUAUA   470 Target Full Sequence	2.5	Zea mays clone 449244 mRNA sequence	NA	coding protein	psRNATarget
EU957329.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   |||||||||||||||||||*|||* targets:616   AAGACACAGUGUCUUAGCUCUAUA   639 Target Full Sequence	2.5	Zea mays clone 1588642 REX1 DNA Repair family protein mRNA, complete cds	NA	coding protein	psRNATarget
EU948077.1	ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1   ||||||||||*|||||||||*||| targets:987   AAGACACAGUAUCUUAGCUUCAUG   1010 Target Full Sequence	2.5	Zea mays clone 369446 mRNA sequence	NA	coding protein	psRNATarget