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BaseInfo

ncRNA ID novel_zma_miR5559
Species Zea mays
Class miRNA
Genome position Chr9:22943786-22943839 [+]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - CAUAAAGCUAAGACACUGUGUCUU - 24
Stem-loop(if miRNA) --CAU      -       U       C
     AAAGCU AAGACAC GUGUCUU G
     |||||| ||||||| |||||||
     UUUUGA UUCUGUG CAUAGAA U
UAUUU      A       -       U
Stem-loop sequence CAUAAAGCUAAGACACUGUGUCUUCGUUAAGAUACGUGUCUUAAGUUUUUUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945043.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*||||
targets:1023   AAGACACAGUGUCUUAGCUCUAUG   1046

1.5 Zea mays clone 239070 mRNA sequence NA coding protein psRNATarget
XM_020539225.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*||||
targets:375   AAGACACAGUGUCUUAGCUCUAUG   398

1.5 PREDICTED: Zea mays probable histidine kinase 2 (LOC109940133), mRNA NA coding protein psRNATarget
XM_008668777.2
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*||||
targets:892   AAGACACAGUGUCUUAGCUCUAUG   915

1.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008668776.2
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*||||
targets:916   AAGACACAGUGUCUUAGCUCUAUG   939

1.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547330.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*||||
targets:1919   AAGACACAGUGUCUUAGCUCUAUG   1942

1.5 PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (LOC100191177), transcript variant X1, mRNA NA coding protein psRNATarget
EU974433.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*|||*
targets:447   AAGACACAGUGUCUUAGCUCUAUA   470

2.5 Zea mays clone 449244 mRNA sequence NA coding protein psRNATarget
EU957329.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  |||||||||||||||||||*|||*
targets:616   AAGACACAGUGUCUUAGCUCUAUA   639

2.5 Zea mays clone 1588642 REX1 DNA Repair family protein mRNA, complete cds NA coding protein psRNATarget
EU948077.1
ncRNA:24   UUCUGUGUCACAGAAUCGAAAUAC   1
  ||||||||||*|||||||||*|||
targets:987   AAGACACAGUAUCUUAGCUUCAUG   1010

2.5 Zea mays clone 369446 mRNA sequence NA coding protein psRNATarget