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BaseInfo

ncRNA ID novel_zma_miR5552
Species Zea mays
Class miRNA
Genome position Chr9:143105121-143105220 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647343;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - GACCUAUCUUCCUUUUUGUGAGGG - 24
Stem-loop(if miRNA) --            U       C             CCACCAG     GU
  CUCACAAAAAGG GGAUAGG CCCACCUGCAGGU       AUAAC  U
  |||||||||||| ||||||| |||||||||||||       |||||
  GAGUGUUUUUCC UCUAUCC GGGUGGGCGUCCA       UGUUG  U
GG            U       A             UUUAUUA     AU
Stem-loop sequence CUCACAAAAAGGUGGAUAGGCCCCACCUGCAGGUCCACCAGAUAACGUUUUAGUUGUAUUAUUUACCUGCGGGUGGGACCUAUCUUCCUUUUUGUGAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539340.1
ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1
  *=||--==||||||||||||*|||||
targets:2864   AUCUGAUGCAAAAAGGAAGAAAGGUC   2889

2.5 PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539338.1
ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1
  *=||--==||||||||||||*|||||
targets:2736   AUCUGAUGCAAAAAGGAAGAAAGGUC   2761

2.5 PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020539334.1
ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1
  *=||--==||||||||||||*|||||
targets:2838   AUCUGAUGCAAAAAGGAAGAAAGGUC   2863

2.5 PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539330.1
ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1
  *=||--==||||||||||||*|||||
targets:2830   AUCUGAUGCAAAAAGGAAGAAAGGUC   2855

2.5 PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X1, mRNA NA coding protein psRNATarget