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BaseInfo

ncRNA ID	novel_zma_miR5552
Species	Zea mays
Class	miRNA
Genome position	Chr9:143105121-143105220 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647343;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GACCUAUCUUCCUUUUUGUGAGGG - 24
Stem-loop(if miRNA)	--            U       C             CCACCAG     GU   CUCACAAAAAGG GGAUAGG CCCACCUGCAGGU       AUAAC  U   |||||||||||| ||||||| |||||||||||||       |||||   GAGUGUUUUUCC UCUAUCC GGGUGGGCGUCCA       UGUUG  U GG            U       A             UUUAUUA     AU
Stem-loop sequence	CUCACAAAAAGGUGGAUAGGCCCCACCUGCAGGUCCACCAGAUAACGUUUUAGUUGUAUUAUUUACCUGCGGGUGGGACCUAUCUUCCUUUUUGUGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539340.1	ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1   *=||--==||||||||||||*||||| targets:2864   AUCUGAUGCAAAAAGGAAGAAAGGUC   2889 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539338.1	ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1   *=||--==||||||||||||*||||| targets:2736   AUCUGAUGCAAAAAGGAAGAAAGGUC   2761 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539334.1	ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1   *=||--==||||||||||||*||||| targets:2838   AUCUGAUGCAAAAAGGAAGAAAGGUC   2863 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539330.1	ncRNA:24   GGGA--GUGUUUUUCCUUCUAUCCAG   1   *=||--==||||||||||||*||||| targets:2830   AUCUGAUGCAAAAAGGAAGAAAGGUC   2855 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100502361 (LOC100502361), transcript variant X1, mRNA	NA	coding protein	psRNATarget