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BaseInfo

ncRNA ID	novel_zma_miR5549
Species	Zea mays
Class	miRNA
Genome position	Chr8:151912966-151913038 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	50 - CUCUACUAUACUUAAAACAUCAGU - 73
Stem-loop(if miRNA)	--     C             U   CUACAUAAAUA   UGGUG UUUAAGUAUAGUA AGA           U   ||||| ||||||||||||| |||           U   ACUAC AAAUUCAUAUCAU UCU           A UG     A             C   ACUAUCAUCAU
Stem-loop sequence	UGGUGCUUUAAGUAUAGUAUAGACUACAUAAAUAUUAUACUACUAUCAUCUCUACUAUACUUAAAACAUCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547954.1	ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1   |||||||||||||||||||||*|| targets:678   ACUGAUGUUUUAAGUAUAGUAUAG   701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547953.1	ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1   |||||||||||||||||||||*|| targets:678   ACUGAUGUUUUAAGUAUAGUAUAG   701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552698.1	ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1   ||||=||*|||||||||||||||| targets:155   ACUGGUGCUUUAAGUAUAGUAGAG   178 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ076153.1	ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1   |||||||*|||||||||||||*|| targets:12   ACUGAUGCUUUAAGUAUAGUAUAG   35 Target Full Sequence	2.5	TSA: Zea mays contig11790, mRNA sequence	NA	coding protein	psRNATarget
BT017320.1	ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1   *|||=||*|||||||||||||*|| targets:45   CCUGGUGCUUUAAGUAUAGUAUAG   68 Target Full Sequence	2.5	Zea mays clone EL01N0319C06.c mRNA sequence	NA	coding protein	psRNATarget