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BaseInfo

ncRNA ID novel_zma_miR5549
Species Zea mays
Class miRNA
Genome position Chr8:151912966-151913038 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647390;SRR2647467
Length 24
Mature sequence(if miRNA) 50 - CUCUACUAUACUUAAAACAUCAGU - 73
Stem-loop(if miRNA) --     C             U   CUACAUAAAUA
  UGGUG UUUAAGUAUAGUA AGA           U
  ||||| ||||||||||||| |||           U
  ACUAC AAAUUCAUAUCAU UCU           A
UG     A             C   ACUAUCAUCAU
Stem-loop sequence UGGUGCUUUAAGUAUAGUAUAGACUACAUAAAUAUUAUACUACUAUCAUCUCUACUAUACUUAAAACAUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547954.1
ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1
  |||||||||||||||||||||*||
targets:678   ACUGAUGUUUUAAGUAUAGUAUAG   701

1.5 PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547953.1
ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1
  |||||||||||||||||||||*||
targets:678   ACUGAUGUUUUAAGUAUAGUAUAG   701

1.5 PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552698.1
ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1
  ||||=||*||||||||||||||||
targets:155   ACUGGUGCUUUAAGUAUAGUAGAG   178

1.0 PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA NA coding protein psRNATarget
EZ076153.1
ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1
  |||||||*|||||||||||||*||
targets:12   ACUGAUGCUUUAAGUAUAGUAUAG   35

2.5 TSA: Zea mays contig11790, mRNA sequence NA coding protein psRNATarget
BT017320.1
ncRNA:24   UGACUACAAAAUUCAUAUCAUCUC   1
  *|||=||*|||||||||||||*||
targets:45   CCUGGUGCUUUAAGUAUAGUAUAG   68

2.5 Zea mays clone EL01N0319C06.c mRNA sequence NA coding protein psRNATarget