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BaseInfo

ncRNA ID novel_zma_miR5547
Species Zea mays
Class miRNA
Genome position Chr5:170102445-170102522 [+]
Reference genome RefGen_v4
Source SRR1618883;SRR5099742
Length 24
Mature sequence(if miRNA) 1 - UGCAACGGAACUGUAUAAUAACAC - 24
Stem-loop(if miRNA) --    A   -A  U    -A      CA     U     A
  UGCA CGG  AC GUAU  AUAACA  AUAAC UAUGU C
  |||| |||  || ||||  ||||||  ||||| |||||
  ACGU GCC  UG UAUA  UAUUGU  UAUUG GUGUA A
UU    -   CG  -    GA      UA     U     U
Stem-loop sequence UGCAACGGAACUGUAUAAUAACACAAUAACUUAUGUACAUAUGUGUGUUAUAUUGUUAUAGAUAUGUGCCCGUGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU971991.1
ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1
  ||||||||||||=|||||||||||
targets:537   GUGUUAUUAUACGGUUCCGUUGCA   560

1.5 Zea mays clone 373201 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU971943.1
ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1
  ||||||||||||=|||||||||||
targets:643   GUGUUAUUAUACGGUUCCGUUGCA   666

1.5 Zea mays clone 372642 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020539424.1
ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1
  |||||=||||||=|||||||||||
targets:1085   GUGUUGUUAUACGGUUCCGUUGCA   1108

2.5 PREDICTED: Zea mays uncharacterized LOC103629832 (LOC103629832), mRNA NA coding protein psRNATarget
EZ059713.1
ncRNA:24   CACAAUAA-UAUGUCAAGGCAACGU   1
  *|***|||-||||||||||||||||
targets:7   CUCACAUUGAUACAGUUCCGUUGCA   31

2.0 TSA: Zea mays contig60835, mRNA sequence NA coding protein psRNATarget