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BaseInfo

ncRNA ID	novel_zma_miR5547
Species	Zea mays
Class	miRNA
Genome position	Chr5:170102445-170102522 [+]
Reference genome	RefGen_v4
Source	SRR1618883;SRR5099742
Length	24
Mature sequence(if miRNA)	1 - UGCAACGGAACUGUAUAAUAACAC - 24
Stem-loop(if miRNA)	--    A   -A  U    -A      CA     U     A   UGCA CGG  AC GUAU  AUAACA  AUAAC UAUGU C   |||| |||  || ||||  ||||||  ||||| |||||   ACGU GCC  UG UAUA  UAUUGU  UAUUG GUGUA A UU    -   CG  -    GA      UA     U     U
Stem-loop sequence	UGCAACGGAACUGUAUAAUAACACAAUAACUUAUGUACAUAUGUGUGUUAUAUUGUUAUAGAUAUGUGCCCGUGCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU971991.1	ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1   ||||||||||||=||||||||||| targets:537   GUGUUAUUAUACGGUUCCGUUGCA   560 Target Full Sequence	1.5	Zea mays clone 373201 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU971943.1	ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1   ||||||||||||=||||||||||| targets:643   GUGUUAUUAUACGGUUCCGUUGCA   666 Target Full Sequence	1.5	Zea mays clone 372642 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539424.1	ncRNA:24   CACAAUAAUAUGUCAAGGCAACGU   1   |||||=||||||=||||||||||| targets:1085   GUGUUGUUAUACGGUUCCGUUGCA   1108 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103629832 (LOC103629832), mRNA	NA	coding protein	psRNATarget
EZ059713.1	ncRNA:24   CACAAUAA-UAUGUCAAGGCAACGU   1   *|***|||-|||||||||||||||| targets:7   CUCACAUUGAUACAGUUCCGUUGCA   31 Target Full Sequence	2.0	TSA: Zea mays contig60835, mRNA sequence	NA	coding protein	psRNATarget