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BaseInfo

ncRNA ID novel_zma_miR5543
Species Zea mays
Class miRNA
Genome position Chr1:232632854-232632947 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647467
Length 23
Mature sequence(if miRNA) 1 - CCACAGAUCUUGGCGCCGAGCUU - 23
Stem-loop(if miRNA) C   --      -             ----------C        AU     A
 CAC  AGAUCU UGGCGCCGAGCUU           GUGCCGCG  GGCUC A
 |||  |||||| |||||||||||||           ||||||||  |||||
 GUG  UCUAGA ACCGUGGCUCGAG           UACGGUGC  UCGGG A
-   CU      U             CUCGGUGUAAC        GG     A
Stem-loop sequence CCACAGAUCUUGGCGCCGAGCUUCGUGCCGCGAUGGCUCAAAAGGGCUGGCGUGGCAUCAAUGUGGCUCGAGCUCGGUGCCAUAGAUCUUCGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008672912.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *||||||||||||||||||||||
targets:369   UAGCUCGGCGCCAAGAUCUGUGG   391

0.0 PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA NA coding protein psRNATarget
XM_008652503.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *||||||||||||||||||||||
targets:402   UAGCUCGGCGCCAAGAUCUGUGG   424

0.0 PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  =||||||||||||||||||*|||
targets:1837   GAGCUCGGCGCCAAGAUCUAUGG   1859

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  =||||||||||||||||||*|||
targets:1862   GAGCUCGGCGCCAAGAUCUAUGG   1884

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  =||||||||||||||||||*|||
targets:1869   GAGCUCGGCGCCAAGAUCUAUGG   1891

1.5 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
JB166443.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *||||||||||||||||||*|||
targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167

1.5 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
LQ238112.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *||||||||||||||||||*|||
targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167

1.5 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
HI405982.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *||||||||||||||||||*|||
targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167

1.5 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
JB166376.1
ncRNA:20   GAGCCGCGGUUCUAGACACC   1
  ||||||||||||||||||||
targets:1   CUCGGCGCCAAGAUCUGUGG   20

0.0 Sequence 4040 from Patent EP2559767 NA coding protein psRNATarget
HI405915.1
ncRNA:20   GAGCCGCGGUUCUAGACACC   1
  ||||||||||||||||||||
targets:1   CUCGGCGCCAAGAUCUGUGG   20

0.0 Sequence 4040 from Patent EP2074227 NA coding protein psRNATarget
LQ238045.1
ncRNA:20   GAGCCGCGGUUCUAGACACC   1
  ||||||||||||||||||||
targets:1   CUCGGCGCCAAGAUCUGUGG   20

0.0 Sequence 4040 from Patent EP2985353 NA coding protein psRNATarget
XM_008664820.2
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:13   UACCUCGGCGCCAAGAUCUAUGG   35

1.5 PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:58   UACCUCGGCGCCAAGAUCUAUGG   80

1.5 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020548134.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:35   UACCUCGGCGCCAAGAUCUAUGG   57

1.5 PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:215   UACCUCGGCGCCAAGAUCUAUGG   237

1.5 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:215   UACCUCGGCGCCAAGAUCUAUGG   237

1.5 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:215   UACCUCGGCGCCAAGAUCUAUGG   237

1.5 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:219   UACCUCGGCGCCAAGAUCUAUGG   241

1.5 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:219   UACCUCGGCGCCAAGAUCUAUGG   241

1.5 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:284   UACCUCGGCGCCAAGAUCUAUGG   306

1.5 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||||||||||||||*|||
targets:991   UACCUCGGCGCCAAGAUCUAUGG   1013

1.5 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  ==|*|||||||||||||||*|||
targets:349   GGGGUCGGCGCCAAGAUCUAUGG   371

1.5 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_020552215.1
ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1
  *|*||||*|||||||||||*|||
targets:4   UACCUCGACGCCAAGAUCUAUGG   26

2.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA NA coding protein psRNATarget