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BaseInfo

ncRNA ID	novel_zma_miR5543
Species	Zea mays
Class	miRNA
Genome position	Chr1:232632854-232632947 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647467
Length	23
Mature sequence(if miRNA)	1 - CCACAGAUCUUGGCGCCGAGCUU - 23
Stem-loop(if miRNA)	C   --      -             ----------C        AU     A  CAC  AGAUCU UGGCGCCGAGCUU           GUGCCGCG  GGCUC A  |||  |||||| |||||||||||||           ||||||||  |||||  GUG  UCUAGA ACCGUGGCUCGAG           UACGGUGC  UCGGG A -   CU      U             CUCGGUGUAAC        GG     A
Stem-loop sequence	CCACAGAUCUUGGCGCCGAGCUUCGUGCCGCGAUGGCUCAAAAGGGCUGGCGUGGCAUCAAUGUGGCUCGAGCUCGGUGCCAUAGAUCUUCGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672912.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|||||||||||||||||||||| targets:369   UAGCUCGGCGCCAAGAUCUGUGG   391 Target Full Sequence	0.0	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|||||||||||||||||||||| targets:402   UAGCUCGGCGCCAAGAUCUGUGG   424 Target Full Sequence	0.0	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   =||||||||||||||||||*||| targets:1837   GAGCUCGGCGCCAAGAUCUAUGG   1859 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   =||||||||||||||||||*||| targets:1862   GAGCUCGGCGCCAAGAUCUAUGG   1884 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   =||||||||||||||||||*||| targets:1869   GAGCUCGGCGCCAAGAUCUAUGG   1891 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166443.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *||||||||||||||||||*||| targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *||||||||||||||||||*||| targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
HI405982.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *||||||||||||||||||*||| targets:145   UAGCUCGGCGCCAAGAUCUAUGG   167 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166376.1	ncRNA:20   GAGCCGCGGUUCUAGACACC   1   |||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUGG   20 Target Full Sequence	0.0	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
HI405915.1	ncRNA:20   GAGCCGCGGUUCUAGACACC   1   |||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUGG   20 Target Full Sequence	0.0	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:20   GAGCCGCGGUUCUAGACACC   1   |||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUGG   20 Target Full Sequence	0.0	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:13   UACCUCGGCGCCAAGAUCUAUGG   35 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:58   UACCUCGGCGCCAAGAUCUAUGG   80 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:35   UACCUCGGCGCCAAGAUCUAUGG   57 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:215   UACCUCGGCGCCAAGAUCUAUGG   237 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:215   UACCUCGGCGCCAAGAUCUAUGG   237 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:215   UACCUCGGCGCCAAGAUCUAUGG   237 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:219   UACCUCGGCGCCAAGAUCUAUGG   241 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:219   UACCUCGGCGCCAAGAUCUAUGG   241 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:284   UACCUCGGCGCCAAGAUCUAUGG   306 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||||||||||||||*||| targets:991   UACCUCGGCGCCAAGAUCUAUGG   1013 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   ==|*|||||||||||||||*||| targets:349   GGGGUCGGCGCCAAGAUCUAUGG   371 Target Full Sequence	1.5	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020552215.1	ncRNA:23   UUCGAGCCGCGGUUCUAGACACC   1   *|*||||*|||||||||||*||| targets:4   UACCUCGACGCCAAGAUCUAUGG   26 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA	NA	coding protein	psRNATarget