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BaseInfo

ncRNA ID novel_zma_miR5541
Species Zea mays
Class miRNA
Genome position Chr5:154998629-154998827 [+]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 176 - UUUCAUCUCCCACAGCGGUUCCCC - 199
Stem-loop(if miRNA) --         A                                                    G                            -   ACU
  GGAACCGCU UGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGU AUAUAGGGGGAGAAAUUUAGAGAGAACC UUG   A
  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
  CCUUGGCGA ACCCUCUACUUUUUCAUCACCUAUUUUACAACUACUACACUGCGUUUUUUCA UAUAUCCCCCUCUUUAAAUCUCUCUUGG AAC   U
CC         C                                                    A                            C   ACC
Stem-loop sequence GGAACCGCUAUGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGUGAUAUAGGGGGAGAAAUUUAGAGAGAACCUUGACUAUCCACAACGGUUCUCUCUAAAUUUCUCCCCCUAUAUAACUUUUUUGCGUCACAUCAUCAACAUUUUAUCCACUACUUUUUCAUCUCCCACAGCGGUUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064747.2
ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1
  ||||||||||||*|||||||||||
targets:100   GGGGAACCGCUGCGGGAGAUGAAA   123

1.5 Zea mays full-length cDNA clone ZM_BFb0101D21 mRNA, complete cds NA coding protein psRNATarget
EU976760.1
ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1
  ||*|=|=|||*||||||||||||*
targets:658   GGUGGAUCGCAGUGGGAGAUGAAU   681

3.0 Zea mays clone 989428 mRNA sequence NA coding protein psRNATarget
BT041570.1
ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1
  ||*|=|=|||*||||||||||||*
targets:245   GGUGGAUCGCAGUGGGAGAUGAAU   268

3.0 Zea mays full-length cDNA clone ZM_BFb0008I03 mRNA, complete cds NA coding protein psRNATarget
BT037184.1
ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1
  ||*|=|=|||*||||||||||||*
targets:634   GGUGGAUCGCAGUGGGAGAUGAAU   657

3.0 Zea mays full-length cDNA clone ZM_BFb0157P18 mRNA, complete cds NA coding protein psRNATarget
NM_001143096.1
ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1
  ||*|=|=|||*||||||||||||*
targets:634   GGUGGAUCGCAGUGGGAGAUGAAU   657

3.0 Zea mays putative protein kinase superfamily protein (LOC100216690), mRNA NA coding protein psRNATarget