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BaseInfo

ncRNA ID	novel_zma_miR5541
Species	Zea mays
Class	miRNA
Genome position	Chr5:154998629-154998827 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	176 - UUUCAUCUCCCACAGCGGUUCCCC - 199
Stem-loop(if miRNA)	--         A                                                    G                            -   ACU   GGAACCGCU UGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGU AUAUAGGGGGAGAAAUUUAGAGAGAACC UUG   A   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||   CCUUGGCGA ACCCUCUACUUUUUCAUCACCUAUUUUACAACUACUACACUGCGUUUUUUCA UAUAUCCCCCUCUUUAAAUCUCUCUUGG AAC   U CC         C                                                    A                            C   ACC
Stem-loop sequence	GGAACCGCUAUGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGUGAUAUAGGGGGAGAAAUUUAGAGAGAACCUUGACUAUCCACAACGGUUCUCUCUAAAUUUCUCCCCCUAUAUAACUUUUUUGCGUCACAUCAUCAACAUUUUAUCCACUACUUUUUCAUCUCCCACAGCGGUUCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064747.2	ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1   ||||||||||||*||||||||||| targets:100   GGGGAACCGCUGCGGGAGAUGAAA   123 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101D21 mRNA, complete cds	NA	coding protein	psRNATarget
EU976760.1	ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1   ||*|=|=|||*||||||||||||* targets:658   GGUGGAUCGCAGUGGGAGAUGAAU   681 Target Full Sequence	3.0	Zea mays clone 989428 mRNA sequence	NA	coding protein	psRNATarget
BT041570.1	ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1   ||*|=|=|||*||||||||||||* targets:245   GGUGGAUCGCAGUGGGAGAUGAAU   268 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008I03 mRNA, complete cds	NA	coding protein	psRNATarget
BT037184.1	ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1   ||*|=|=|||*||||||||||||* targets:634   GGUGGAUCGCAGUGGGAGAUGAAU   657 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0157P18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143096.1	ncRNA:24   CCCCUUGGCGACACCCUCUACUUU   1   ||*|=|=|||*||||||||||||* targets:634   GGUGGAUCGCAGUGGGAGAUGAAU   657 Target Full Sequence	3.0	Zea mays putative protein kinase superfamily protein (LOC100216690), mRNA	NA	coding protein	psRNATarget