ncRNA ID | novel_zma_miR5541 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:154998629-154998827 [+] |
Reference genome | RefGen_v4 |
Source | SRR1618883 |
Length | 24 |
Mature sequence(if miRNA) | 176 - UUUCAUCUCCCACAGCGGUUCCCC - 199 |
Stem-loop(if miRNA) |
--         A                                                    G                            -   ACU   GGAACCGCU UGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGU AUAUAGGGGGAGAAAUUUAGAGAGAACC UUG   A   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||   CCUUGGCGA ACCCUCUACUUUUUCAUCACCUAUUUUACAACUACUACACUGCGUUUUUUCA UAUAUCCCCCUCUUUAAAUCUCUCUUGG AAC   U CC         C                                                    A                            C   ACC |
Stem-loop sequence | GGAACCGCUAUGGGAGAUGAAAAAGUAGUGGAUAAAAUGUUGAUGAUGUGACGCAAGAAAGUGAUAUAGGGGGAGAAAUUUAGAGAGAACCUUGACUAUCCACAACGGUUCUCUCUAAAUUUCUCCCCCUAUAUAACUUUUUUGCGUCACAUCAUCAACAUUUUAUCCACUACUUUUUCAUCUCCCACAGCGGUUCCCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT064747.2 |
|
1.5 | Zea mays full-length cDNA clone ZM_BFb0101D21 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
EU976760.1 |
|
3.0 | Zea mays clone 989428 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
BT041570.1 |
|
3.0 | Zea mays full-length cDNA clone ZM_BFb0008I03 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
BT037184.1 |
|
3.0 | Zea mays full-length cDNA clone ZM_BFb0157P18 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
NM_001143096.1 |
|
3.0 | Zea mays putative protein kinase superfamily protein (LOC100216690), mRNA | NA | coding protein | psRNATarget |