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BaseInfo

ncRNA ID	novel_zma_miR5540
Species	Zea mays
Class	miRNA
Genome position	Chr8:93474860-93474936 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	23
Mature sequence(if miRNA)	1 - AAGAUCUACGGCGCCGAGGUACG - 23
Stem-loop(if miRNA)	--   G                  C A       AUGC   UAC UCGGCGCCGUAGAUCUUG C CCGAGGU    G   ||| |||||||||||||||||| | |||||||    C   AUG AGCCGCGGCAUCUAGAAC G GGCUCUA    C GC   G                  C C       GGUA
Stem-loop sequence	UACGUCGGCGCCGUAGAUCUUGCCACCGAGGUAUGCGCCAUGGAUCUCGGCGCCAAGAUCUACGGCGCCGAGGUACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544295.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:3   CGUACCUCGGCGCCAUAGAUCUU   25 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUU   182 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:164   CGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:164   CGUACCUCGGCGCCAUAGAUCUU   186 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:229   CGUACCUCGGCGCCAUAGAUCUU   251 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||||||||||||||*|||||||| targets:936   CGUACCUCGGCGCCAUAGAUCUU   958 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   =|||||||||||||*|||||||| targets:2   UGUACCUCGGCGCCAUAGAUCUU   24 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:281   CACAUCUCGGCGCCAUAGAUCUU   303 Target Full Sequence	2.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:1673   CACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:1673   CACAUCUCGGCGCCAUAGAUCUU   1695 Target Full Sequence	2.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:1755   CACAUCUCGGCGCCAUAGAUCUU   1777 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:1780   CACAUCUCGGCGCCAUAGAUCUU   1802 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   |**|=|||||||||*|||||||| targets:1787   CACAUCUCGGCGCCAUAGAUCUU   1809 Target Full Sequence	2.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:782   CG-AGCUCGGCGCCAUAGAUCUU   803 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:130   CG-AGCUCGGCGCCAUAGAUCUU   151 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:1222   CG-AGCUCGGCGCCAUAGAUCUU   1243 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:128   CG-AGCUCGGCGCCAUAGAUCUU   149 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:1220   CG-AGCUCGGCGCCAUAGAUCUU   1241 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:188   CG-AGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:1279   CG-AGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:188   CG-AGCUCGGCGCCAUAGAUCUU   209 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:23   GCAUGGAGCCGCGGCAUCUAGAA   1   ||-|*|||||||||*|||||||| targets:1279   CG-AGCUCGGCGCCAUAGAUCUU   1300 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget