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BaseInfo

ncRNA ID novel_zma_miR5534
Species Zea mays
Class miRNA
Genome position Chr8:162260587-162260715 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR1583942;SRR1583943
Length 24
Mature sequence(if miRNA) 106 - GGGCUUGUUCGUUUCUAUCGGAUU - 129
Stem-loop(if miRNA) --       -                  --CACC  A   U     --   -UAAUCAAAG    UA
  GGGCUUG UUCGUUUCUAUCGGAUUG      CG AAU AUUCC  ACC          UUUA  U
  ||||||| ||||||||||||||||||      || ||| |||||  |||          ||||  A
  UCCGGAC AAGCAAAGAUAGCCUAAC      GC UUG UAAGG  UGG          AGAU  A
AA       C                  CACCCA  C   C     AU   CCUAACAAAA    UA
Stem-loop sequence GGGCUUGUUCGUUUCUAUCGGAUUGCACCCGAAAUUAUUCCACCUAAUCAAAGUUUAUAUAAAUUAGAAAAACAAUCCGGUUAGGAAUCGUUCCGACCCACCAAUCCGAUAGAAACGAACCAGGCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405945.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:110   AAUCCGAUAGAAACGAACAAGACC   133

1.5 Sequence 4070 from Patent EP2074227 NA coding protein psRNATarget
JB166406.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:110   AAUCCGAUAGAAACGAACAAGACC   133

1.5 Sequence 4070 from Patent EP2559767 NA coding protein psRNATarget
LQ238075.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:110   AAUCCGAUAGAAACGAACAAGACC   133

1.5 Sequence 4070 from Patent EP2985353 NA coding protein psRNATarget
HI405930.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:114   AAUCCGAUAGAAACGAACAAGGCC   137

1.5 Sequence 4055 from Patent EP2074227 NA coding protein psRNATarget
JB166391.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:114   AAUCCGAUAGAAACGAACAAGGCC   137

1.5 Sequence 4055 from Patent EP2559767 NA coding protein psRNATarget
LQ238060.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:114   AAUCCGAUAGAAACGAACAAGGCC   137

1.5 Sequence 4055 from Patent EP2985353 NA coding protein psRNATarget
NM_001138677.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:600   AAUCCGAUAGAAACGAACAAGGCC   623

1.5 Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA NA coding protein psRNATarget
BT035867.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:600   AAUCCGAUAGAAACGAACAAGGCC   623

1.5 Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds NA coding protein psRNATarget
BT084172.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:615   AAUCCGAUAGAAACGAACAAGGCC   638

1.5 Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds NA coding protein psRNATarget
AY103713.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:630   AAUCCGAUAGAAACGAACAAGGCC   653

1.5 Zea mays PCO076540 mRNA sequence NA coding protein psRNATarget
XM_008668968.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:689   AAUCCGAUAGAAACGAACAAGGCC   712

1.5 PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA NA coding protein psRNATarget
EU965022.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:1552   AAUCCGAUAGAAACGAACAAGGCC   1575

1.5 Zea mays clone 283266 agmatine deiminase mRNA, complete cds NA coding protein psRNATarget
NM_001156428.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:1552   AAUCCGAUAGAAACGAACAAGGCC   1575

1.5 Zea mays agmatine deiminase (LOC100283528), mRNA NA coding protein psRNATarget
XM_008674095.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||||||||||||||*||
targets:2157   AAUCCGAUAGAAACGAACAAGGCC   2180

1.5 PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS69), transcript variant X1, mRNA NA coding protein psRNATarget
HI405804.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||||=||||||||||||*||
targets:114   AAUCCGAUGGAAACGAACAAGGCC   137

2.5 Sequence 3929 from Patent EP2074227 NA coding protein psRNATarget
JB166265.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||||=||||||||||||*||
targets:114   AAUCCGAUGGAAACGAACAAGGCC   137

2.5 Sequence 3929 from Patent EP2559767 NA coding protein psRNATarget
LQ237934.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||||=||||||||||||*||
targets:114   AAUCCGAUGGAAACGAACAAGGCC   137

2.5 Sequence 3929 from Patent EP2985353 NA coding protein psRNATarget
EU953779.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||||=||||||||||||*||
targets:723   AAUCCGAUGGAAACGAACAAGGCC   746

2.5 Zea mays clone 1445891 mRNA sequence NA coding protein psRNATarget
AY103808.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||=||||||||||||||*||
targets:657   AAUCCGGUAGAAACGAACAAGGCC   680

2.5 Zea mays PCO103670 mRNA sequence NA coding protein psRNATarget
XM_008650716.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||=||||||||||||||*||
targets:2685   AAUCCGGUAGAAACGAACAAGGCC   2708

2.5 PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539318.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||=||||||||||||||*||
targets:2688   AAUCCGGUAGAAACGAACAAGGCC   2711

2.5 PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA NA coding protein psRNATarget
EZ060491.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||||||=||*|||||||||||||=
targets:227   AAUCCGGUACAAACGAACAAGCCU   250

3.0 TSA: Zea mays contig61613, mRNA sequence NA coding protein psRNATarget
JB166425.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||*|||||||||||*||
targets:112   AAUCCGAUACAAACGAACAAGGCC   135

2.5 Sequence 4089 from Patent EP2559767 NA coding protein psRNATarget
LQ238094.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||*|||||||||||*||
targets:112   AAUCCGAUACAAACGAACAAGGCC   135

2.5 Sequence 4089 from Patent EP2985353 NA coding protein psRNATarget
HI405964.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||||*|||||||||||*||
targets:112   AAUCCGAUACAAACGAACAAGGCC   135

2.5 Sequence 4089 from Patent EP2074227 NA coding protein psRNATarget
BT068430.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*|||||||||||||*||
targets:556   AAUCCGACAGAAACGAACAAGACC   579

2.5 Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds NA coding protein psRNATarget
XM_008676360.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*|||||||||||||*||
targets:1924   AAUCCGACAGAAACGAACAAGGCC   1947

2.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676377.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*|||||||||||||*||
targets:1998   AAUCCGACAGAAACGAACAAGGCC   2021

2.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676366.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*|||||||||||||*||
targets:2016   AAUCCGACAGAAACGAACAAGGCC   2039

2.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676374.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*|||||||||||||*||
targets:2092   AAUCCGACAGAAACGAACAAGGCC   2115

2.5 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA NA coding protein psRNATarget
HI405907.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCCC   137

3.0 Sequence 4032 from Patent EP2074227 NA coding protein psRNATarget
JB166368.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCCC   137

3.0 Sequence 4032 from Patent EP2559767 NA coding protein psRNATarget
LQ238037.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCCC   137

3.0 Sequence 4032 from Patent EP2985353 NA coding protein psRNATarget
EZ056395.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:137   AAUCCGACGUAAACGAACAAGCCC   160

3.0 TSA: Zea mays contig57517, mRNA sequence NA coding protein psRNATarget
BT019200.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:1044   AAUCCGACGCAAACGAACAAGCCC   1067

3.0 Zea mays clone Contig873.F mRNA sequence NA coding protein psRNATarget
XM_008647453.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:3373   AAUCCGACGCAAACGAACAAGCCC   3396

3.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647452.2
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  |||||||*=*||||||||||||||
targets:3361   AAUCCGACGCAAACGAACAAGCCC   3384

3.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA NA coding protein psRNATarget
EZ073175.1
ncRNA:24   UUAGGCUAUCUUUGCUUGUUCGGG   1
  ||*||||*|||||||||||||*||
targets:62   AAACCGACAGAAACGAACAAGGCC   85

2.5 TSA: Zea mays contig08812, mRNA sequence NA coding protein psRNATarget
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