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BaseInfo

ncRNA ID novel_zma_miR5530
Species Zea mays
Class miRNA
Genome position Chr8:177494343-177494423 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647385;SRR2647388;SRR2647389
Length 24
Mature sequence(if miRNA) 58 - AUUAAGUCUAAUUAUUCCAUGAUU - 81
Stem-loop(if miRNA) --              UUC     UUC   UAU   G  - U
  AUUAAGUCUAAUUA   CAUGA   GCA   GUG UG C A
  ||||||||||||||   |||||   |||   ||| || |
  UAAUUCGGAUUAGU   GUAUU   CGU   UAU AC G C
AA              UAA     CAU   --U   G  U A
Stem-loop sequence AUUAAGUCUAAUUAUUCCAUGAUUCGCAUAUGUGGUGCUACAGUCAGUAUUUGCUACUUAUGAAUUGAUUAGGCUUAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008659551.2
ncRNA:24   UUAGUACCUUAUUAAUCUGAAUUA   1
  |||=*||||*|||||||||||*||
targets:1469   AAUUCUGGACUAAUUAGACUUCAU   1492

2.5 PREDICTED: Zea mays polygalacturonase At1g48100 (LOC103637332), mRNA NA coding protein psRNATarget