Search result

BaseInfo

ncRNA ID	ath-miRf10063-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCAGGAGCUUCCUCGUUCUU - NA
Stem-loop(if miRNA)	AAU    A  AA           --     A      CUCC  U GAAGUC   AGAG GA  GAGUUUCUGGU  GAAGA CUUUAG    AG G ||||||   |||| ||  |||||||||||  ||||| ||||||    || UUUCGG   UCUU CU  UUCGAGGACCG  CUUCU GAAGUC    UC U       -CU    G  CC           CG     -      ----  U
Stem-loop sequence	GAAGUCAAUAGAGAGAAAGAGUUUCUGGUGAAGAACUUUAGCUCCAGUGUUCUCUGAAGUCUUCGCGCCAGGAGCUUCCUCGUUCUUCGGCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY457045.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||||||||||||||||||| targets:24   AAGAACGAGGAAGCUCCUGG   43 Target Full Sequence	0.0	Arabidopsis thaliana TFIID component TAF2 (TAF2) mRNA, partial cds	NA	coding protein	psRNATarget
AY102124.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||||||||||||||||||| targets:26   AAGAACGAGGAAGCUCCUGG   45 Target Full Sequence	0.0	Arabidopsis thaliana At1g73960/F2P9_17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_106055.5	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||||||||||||||||||| targets:108   AAGAACGAGGAAGCUCCUGG   127 Target Full Sequence	0.0	Arabidopsis thaliana TBP-associated factor 2 (TAF2), mRNA	TBP-associated factor 2(TAF2)	coding protein	psRNATarget
NM_001334615.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||||||||||||||||||| targets:108   AAGAACGAGGAAGCUCCUGG   127 Target Full Sequence	0.0	Arabidopsis thaliana TBP-associated factor 2 (TAF2), mRNA	TBP-associated factor 2(TAF2)	coding protein	psRNATarget
NM_001334616.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||||||||||||||||||| targets:108   AAGAACGAGGAAGCUCCUGG   127 Target Full Sequence	0.0	Arabidopsis thaliana TBP-associated factor 2 (TAF2), mRNA	TBP-associated factor 2(TAF2)	coding protein	psRNATarget
BX824794.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   *=|||=|||||||||||||* targets:1735   UGGAAUGAGGAAGCUCCUGC   1754 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH72ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_148465.2	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   *|*||=|||||||||||||* targets:1042   CAUAAUGAGGAAGCUCCUGC   1061 Target Full Sequence	3.0	Arabidopsis thaliana ENTH/ANTH/VHS superfamily protein mRNA	ENTH/ANTH/VHS superfamily protein(AT1G14686)	coding protein	psRNATarget
AY954848.1	ncRNA:20   UUCUUGCUCCUUCGAGGACC   1   |||*||*||||||||||||* targets:124   AAGUACAAGGAAGCUCCUGU   143 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein (At3g19200) mRNA, complete cds	NA	coding protein	psRNATarget