Search result

BaseInfo

ncRNA ID novel_zma_miR5520
Species Zea mays
Class miRNA
Genome position Chr7:117541573-117541630 [+]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 35 - CUCUAGUAAGUUACGUAACUUCCU - 58
Stem-loop(if miRNA) --        U      C       CAAA
  GAAGUUAC UAACUU CUAGAGU    G
  |||||||| |||||| |||||||
  CUUCAAUG AUUGAA GAUCUCA    U
UC        C      U       AACA
Stem-loop sequence GAAGUUACUUAACUUCCUAGAGUCAAAGUACAAACUCUAGUAAGUUACGUAACUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UCCUUCAAUGCAUUGAAUGAUCUC   1
  ||||||||||*||||||*||||||
targets:945   AGGAAGUUACUUAACUUCCUAGAG   968

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget
EU949881.1
ncRNA:24   UCCUUCAAUGCAUUGAAUGAUCUC   1
  ||*|||||||*||||||*||||||
targets:905   AGCAAGUUACUUAACUUCCUAGAG   928

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget