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BaseInfo

ncRNA ID novel_zma_miR5517
Species Zea mays
Class miRNA
Genome position Chr1:204457186-204457240 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647343;SRR2647387;SRR2647388;SRR2647390;SRR1997866
Length 24
Mature sequence(if miRNA) 32 - AAGCUGCUGCGGACUACCAAACGC - 55
Stem-loop(if miRNA) --    C  -CU    --       C   
  GUUU GG   UCUG  GCAGCUU UGGC
  |||| ||   ||||  ||||||| |||C
  CAAA CC   AGGC  CGUCGAA ACCA
CG    -  AUC    GU       A   
Stem-loop sequence GUUUCGGCUUCUGGCAGCUUCUGGCCACCAAAAGCUGCUGCGGACUACCAAACGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ111561.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*|||||||||||||||
targets:147   GCGUUUGGCAGUCCGCAGCAGCUU   170

1.0 TSA: Zea mays contig47222, mRNA sequence NA coding protein psRNATarget
EZ054166.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*|||||||||||||||
targets:268   GCGUUUGGCAGUCCGCAGCAGCUU   291

1.0 TSA: Zea mays contig55288, mRNA sequence NA coding protein psRNATarget
EU947367.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*|||||||||||||||
targets:244   GCGUUUGGCAGUCCGCAGCAGCUU   267

1.0 Zea mays clone 341166 mRNA sequence NA coding protein psRNATarget
XM_008657517.2
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*|||||||||||||||
targets:2538   GCGUUUGGCAGUCCGCAGCAGCUU   2561

1.0 PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537643.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*||||||||||||=||
targets:848   GCGUUUGGCAGUCCGCAGCAGUUU   871

2.5 PREDICTED: Zea mays 50S ribosomal protein L28, chloroplastic-like (LOC109939456), mRNA NA coding protein psRNATarget
EU961827.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  ||||||||*||||=||||||||||
targets:1377   GCGUUUGGCAGUCUGCAGCAGCUU   1400

2.5 Zea mays clone 238443 peptidase M48, Ste24p mRNA, complete cds NA coding protein psRNATarget
EU973347.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  |=||||||*|||||||||=|||||
targets:39   GUGUUUGGCAGUCCGCAGUAGCUU   62

2.5 Zea mays clone 397172 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT061642.2
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  *=||||||*|||||||||||||||
targets:1850   AUGUUUGGCAGUCCGCAGCAGCUU   1873

1.0 Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds NA coding protein psRNATarget
BT019104.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  |||||||**|||||||||||||||
targets:757   GCGUUUGACAGUCCGCAGCAGCUU   780

2.0 Zea mays clone Contig706.F mRNA sequence NA coding protein psRNATarget
BT018867.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  |||||||**|||||||||||||||
targets:1582   GCGUUUGACAGUCCGCAGCAGCUU   1605

2.0 Zea mays clone EL01N0561F02.d mRNA sequence NA coding protein psRNATarget
EU945617.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  |=||||||*||||||||||*||||
targets:896   GUGUUUGGCAGUCCGCAGCCGCUU   919

2.5 Zea mays clone 279548 mRNA sequence NA coding protein psRNATarget
EU951194.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  *=|||||**|||||||||||||||
targets:297   AUGUUUGACAGUCCGCAGCAGCUU   320

2.0 Zea mays clone 689005 mRNA sequence NA coding protein psRNATarget
BT042815.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  *=|||||**|||||||||||||||
targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649

2.0 Zea mays full-length cDNA clone ZM_BFc0045N18 mRNA, complete cds NA coding protein psRNATarget
NM_001148703.1
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  *=|||||**|||||||||||||||
targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649

2.0 Zea mays General transcription factor IIH subunit 2 (LOC100274342), mRNA NA coding protein psRNATarget
XM_008658744.2
ncRNA:24   CGCAAACCAUCAGGCGUCGUCGAA   1
  **|**||||||||||||||||||*
targets:3580   UGGGAUGGUAGUCCGCAGCAGCUC   3603

1.0 PREDICTED: Zea mays lysine-specific demethylase JMJ705 (LOC103636385), mRNA NA coding protein psRNATarget
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