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BaseInfo

ncRNA ID	novel_zma_miR5514
Species	Zea mays
Class	miRNA
Genome position	Chr7:47369477-47369608 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647343;SRR2647390
Length	23
Mature sequence(if miRNA)	110 - ACGAUAACUUAUGUACAAAUAUG - 132
Stem-loop(if miRNA)	-UAU               C    U  UA             A        A         A  A     UUUGUAUAUAGGUUA CGUG UA  AUAUGUUCCCGUU CAACGCAC GGCACUUAC UA U     ||||||||||||||| |||| ||  ||||||||||||| |||||||| ||||||||| || A     AAACAUGUAUUCAAU GCAU AU  UAUACAAGGGCAA GUUGCGUG CCGUGAGUG AU A GUAU               A    C  CA             C        C         G  C
Stem-loop sequence	UAUUUUGUAUAUAGGUUACCGUGUUAUAAUAUGUUCCCGUUACAACGCACAGGCACUUACAUAAUAACUAGGUGAGUGCCCGUGCGUUGCAACGGGAACAUAUACUACUACGAUAACUUAUGUACAAAUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546143.1	ncRNA:23   GUAUAAACAUGUAUUCAAUAGCA   1   |||||||||||||=||||||||| targets:3635   CAUAUUUGUACAUGAGUUAUCGU   3657 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642026 (LOC103642026), mRNA	NA	coding protein	psRNATarget
XM_020546408.1	ncRNA:23   GUAUAAACAUGUAUUCAAUAGCA   1   ||*||||||||||||*||||||| targets:1048   CACAUUUGUACAUAAAUUAUCGU   1070 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636628 (LOC103636628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546408.1	ncRNA:23   GUAUAAACAUGUAUUCAAUAGCA   1   |||||||*|||||||||||*||| targets:1207   CAUAUUUAUACAUAAGUUACCGU   1229 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636628 (LOC103636628), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001177118.1	ncRNA:23   GUAUAAACAUGUAUUCAAUAGCA   1   ||*||||*|||||||||||||*| targets:51   CACAUUUAUACAUAAGUUAUCAU   73 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384622 (LOC100384622), mRNA	NA	coding protein	psRNATarget
BT083780.2	ncRNA:23   GUAUAAACAUGUAUUCAAUAGCA   1   ||*||||*|||||||||||||*| targets:51   CACAUUUAUACAUAAGUUAUCAU   73 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0039F15 mRNA, complete cds	NA	coding protein	psRNATarget