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BaseInfo

ncRNA ID	novel_zma_miR5511
Species	Zea mays
Class	miRNA
Genome position	Chr7:17943217-17943272 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647343;SRR2647385;SRR2647386;SRR2647388;SRR2647391
Length	23
Mature sequence(if miRNA)	34 - GAUCUUGUGGAGCGCGACACCCU - 56
Stem-loop(if miRNA)	--   --    UG     C  C          GAU  CUUG  GAGCG GA ACCCUGGC   |||  ||||  ||||| || |||||||C   CUA  GAAC  CUUGC CU UGGGAUCA AG   AC    GU     U  -
Stem-loop sequence	GAUCUUGUGGAGCGCGACACCCUGGCCACUAGGGUUCUCGUUCUGCAAGCAAUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410202.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   =*||||||||||||||||||||| targets:23   GAGGUGUCGCGCUCCACAAGAUC   45 Target Full Sequence	0.0	Sequence 8327 from Patent EP2074227	NA	coding protein	psRNATarget
JB170663.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   =*||||||||||||||||||||| targets:23   GAGGUGUCGCGCUCCACAAGAUC   45 Target Full Sequence	0.0	Sequence 8327 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242332.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   =*||||||||||||||||||||| targets:23   GAGGUGUCGCGCUCCACAAGAUC   45 Target Full Sequence	0.0	Sequence 8327 from Patent EP2985353	NA	coding protein	psRNATarget
HQ858722.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:233   UCAUCGUCGCGCUCCACGAGAUC   255 Target Full Sequence	2.5	Zea mays clone UT1189 MYB transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
EZ102330.1	ncRNA:23   UCCCACAGC---GCGAGGUGUUCUAG   1   |***|||||---|||||||||||||| targets:25   AAUCUGUCGUCCCGCUCCACAAGAUC   50 Target Full Sequence	3.0	TSA: Zea mays contig37986, mRNA sequence	NA	coding protein	psRNATarget
KJ727494.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:248   UCAUCGUCGCGCUCCACGAGAUC   270 Target Full Sequence	2.5	Zea mays clone pUT5353 MYB transcription factor (MYB99) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001147132.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:337   UCAUCGUCGCGCUCCACGAGAUC   359 Target Full Sequence	2.5	Zea mays MYB transcription factor (LOC100272675), mRNA	NA	coding protein	psRNATarget
BT039155.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:337   UCAUCGUCGCGCUCCACGAGAUC   359 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377K22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174989.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:398   UCAUCGUCGCGCUCCACGAGAUC   420 Target Full Sequence	2.5	Zea mays putative MYB DNA-binding domain superfamily protein (LOC100382234), mRNA	NA	coding protein	psRNATarget
BT063597.1	ncRNA:23   UCCCACAGCGCGAGGUGUUCUAG   1   *****||||||||||||=||||| targets:398   UCAUCGUCGCGCUCCACGAGAUC   420 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds	NA	coding protein	psRNATarget
BT065483.1	ncRNA:23   UCCCACAGC---GCGAGGUGUUCUAG   1   |***|||||---|||||||||||||| targets:106   AAUCUGUCGUCCCGCUCCACAAGAUC   131 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0180E08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157156.1	ncRNA:23   UCCCACAGC---GCGAGGUGUUCUAG   1   |***|||||---|||||||||||||| targets:201   AAUCUGUCGUCCCGCUCCACAAGAUC   226 Target Full Sequence	3.0	Zea mays maspardin (LOC100284261), mRNA	NA	coding protein	psRNATarget
EU967700.1	ncRNA:23   UCCCACAGC---GCGAGGUGUUCUAG   1   |***|||||---|||||||||||||| targets:201   AAUCUGUCGUCCCGCUCCACAAGAUC   226 Target Full Sequence	3.0	Zea mays clone 305453 maspardin mRNA, complete cds	NA	coding protein	psRNATarget