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BaseInfo

ncRNA ID	novel_zma_miR5507
Species	Zea mays
Class	miRNA
Genome position	Chr7:25894748-25894959 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647387;SRR2647388;SRR2647389;SRR2647467
Length	24
Mature sequence(if miRNA)	189 - AUCUCUACUACUUAUUAAGACAGU - 212
Stem-loop(if miRNA)	--  A  A       --        ---      U    --C     CUUU   ---        AC          GG     -UA   GG       C         UCAA   UG UC UUAAUAA  AGUAGAGA   AAGAUU GUUU   UUAGU    GUU   UGGGAGUC  AAAACUGGAG  GAUUG   GGA  UGAAAUC CCUUCUUAU    U   || || |||||||  ||||||||   |||||| ||||   |||||    |||   ||||||||  ||||||||||  |||||   |||  ||||||| |||||||||   AC AG AAUUAUU  UCAUCUCU   UUCUAG UAAA   AAUCA    CAA   ACCUUCAG  UUUUGGCUUC  UUAAC   CCU  AUUUUAG GGAAGAAUA    U UG  -  -       CA        AAA      C    ACA     CUAU   AUA        GC          UU     CUA   -A       A         UAUU
Stem-loop sequence	UGAUCAUUAAUAAAGUAGAGAAAGAUUUGUUUCUUAGUCUUUGUUUGGGAGUCACAAAACUGGAGGGGAUUGUAGGAGGUGAAAUCCCCUUCUUAUUCAAUUUUAUAUAAGAAGGAGAUUUUAAUCCAUCCAAUUUUCUUCGGUUUUCGGACUUCCAAUAAACUAUCACUAAACAAAAUCGAUCUUAAAUCUCUACUACUUAUUAAGACAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546741.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||*||||||||||||||||||||| targets:1194   ACCGUCUUAAUAAGUAGUAGAGAU   1217 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103645334 (LOC103645334), mRNA	NA	coding protein	psRNATarget
XM_020546741.1	ncRNA:24   UGACA---GAAUUAUUCAUCAUCUCUA   1   *=|||---||||||||||||||||||| targets:2310   CUUGUAGCCUUAAUAAGUAGUAGAGAU   2336 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103645334 (LOC103645334), mRNA	NA	coding protein	psRNATarget
XM_020547954.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||*|||||||||=||||||||||| targets:353   ACCGUCUUAAUAGGUAGUAGAGAU   376 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547953.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||*|||||||||=||||||||||| targets:353   ACCGUCUUAAUAGGUAGUAGAGAU   376 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548185.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   *|*||||||||||||||||||||| targets:1036   UCAGUCUUAAUAAGUAGUAGAGAU   1059 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103646073 (LOC103646073), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ076509.1	ncRNA:24   UGAC-A--GAAUUAUUCAUCAUCUCUA   1   |=||-|--||||||||||||||||||| targets:13   AUUGCUUACUUAAUAAGUAGUAGAGAU   39 Target Full Sequence	2.5	TSA: Zea mays contig12146, mRNA sequence	NA	coding protein	psRNATarget
EZ078804.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||*||||||||||||||||*|||| targets:25   ACAGUCUUAAUAAGUAGUAAAGAU   48 Target Full Sequence	1.5	TSA: Zea mays contig14443, mRNA sequence	NA	coding protein	psRNATarget
XM_020538328.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ==||*=|||||||||||||||||| targets:321   GUUGAUUUAAUAAGUAGUAGAGAU   344 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103626302 (LOC103626302), mRNA	NA	coding protein	psRNATarget
EU943423.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||*|*|||||||=||||||||||| targets:103   ACAGGCUUAAUAGGUAGUAGAGAU   126 Target Full Sequence	1.5	Zea mays clone 1622788 mRNA sequence	NA	coding protein	psRNATarget
EU949957.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   ||**||||||||=||||||||||| targets:410   ACCAUCUUAAUAGGUAGUAGAGAU   433 Target Full Sequence	1.5	Zea mays clone 454723 mRNA sequence	NA	coding protein	psRNATarget
EU948596.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   =|*|*||||||||||||||||||| targets:760   GCAGCCUUAAUAAGUAGUAGAGAU   783 Target Full Sequence	0.0	Zea mays clone 380618 mRNA sequence	NA	coding protein	psRNATarget
EU943322.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   =|*|*||||||||||||||||||| targets:1728   GCAGCCUUAAUAAGUAGUAGAGAU   1751 Target Full Sequence	0.0	Zea mays clone 1599166 mRNA sequence	NA	coding protein	psRNATarget
EU971424.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   |=*|*|||||||=||||||||||| targets:669   AUAGGCUUAAUAGGUAGUAGAGAU   692 Target Full Sequence	1.5	Zea mays clone 364372 RALFL33 mRNA, complete cds	NA	coding protein	psRNATarget
BT066300.2	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   |||--|||||*||||||||||||| targets:2011   ACU--CUUAAGAAGUAGUAGAGAU   2032 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0190I07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651974.1	ncRNA:24   UGACAGAAUUAUUCAUCAUCUCUA   1   |**|*||||||||||||||*|||| targets:634   AGAGCCUUAAUAAGUAGUAUAGAU   657 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630947 (LOC103630947), partial mRNA	NA	coding protein	psRNATarget