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BaseInfo

ncRNA ID novel_zma_miR5506
Species Zea mays
Class miRNA
Genome position Chr7:25615207-25615316 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647388;SRR2647390;SRR2647467
Length 22
Mature sequence(if miRNA) 89 - UGUCUCUACUCAAACGUGUUUG - 110
Stem-loop(if miRNA) --     U        UU  -  -  U    A   UU   U   G  G     C  G
  AACAU GUUUGAGU  AG CG GU UGAU UUG  CGU GUA UU AACCG UC C
  ||||| ||||||||  || || || |||| |||  ||| ||| || ||||| ||
  UUGUG CAAACUCA  UC GU CA ACUA AAC  GUA CGU AA UUGGC AG A
GU     -        UC  U  G  U    A   UC   -   G  G     A  U
Stem-loop sequence AACAUUGUUUGAGUUUAGCGGUUUGAUAUUGUUCGUUGUAGUUGAACCGCUCGCAUGAACGGUUGAAGUGCAUGCUCAAAAUCAUACGUGUCUCUACUCAAACGUGUUUG