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BaseInfo

ncRNA ID novel_zma_miR5502
Species Zea mays
Class miRNA
Genome position Chr7:120156488-120156545 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467;SRR1583943
Length 24
Mature sequence(if miRNA) 1 - CUCUAGUAAGUUACGUAACUUCCU - 24
Stem-loop(if miRNA) --        U      C       CAAA
  GAAGUUAC UAACUU CUAGAGU    G
  |||||||| |||||| |||||||
  CUUCAAUG AUUGAA GAUCUCA    U
UC        C      U       AACA
Stem-loop sequence GAAGUUACUUAACUUCCUAGAGUCAAAGUACAAACUCUAGUAAGUUACGUAACUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UCCUUCAAUGCAUUGAAUGAUCUC   1
  ||||||||||*||||||*||||||
targets:945   AGGAAGUUACUUAACUUCCUAGAG   968

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget
EU949881.1
ncRNA:24   UCCUUCAAUGCAUUGAAUGAUCUC   1
  ||*|||||||*||||||*||||||
targets:905   AGCAAGUUACUUAACUUCCUAGAG   928

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget