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BaseInfo

ncRNA ID	novel_zma_miR5501
Species	Zea mays
Class	miRNA
Genome position	Chr7:137157380-137157476 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647387
Length	24
Mature sequence(if miRNA)	1 - AUAAUCUGGGUAGAUUAUAAUCCC - 24
Stem-loop(if miRNA)	--U           A              C  A        A     A    AUUAUAAUCUA CCAGAUUAUAUAAU CA CAAAUUUU AACUA C    ||||||||||| |||||||||||||| || |||||||| ||||| G    UAAUAUUAGAU GGUCUAAUAUAUUA GU GUUUAAAA UUGAU U CCC           G              A  G        C     U
Stem-loop sequence	UAUUAUAAUCUAACCAGAUUAUAUAAUCCAACAAAUUUUAAACUAACGUUUAGUUCAAAAUUUGGUGAAUUAUAUAAUCUGGGUAGAUUAUAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548752.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |||||||||||||||||||||||| targets:27   GGGAUUAUAAUCUACCCAGAUUAU   50 Target Full Sequence	0.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939242), mRNA	NA	coding protein	psRNATarget
XM_008661345.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||||||||||||=|||||||||| targets:3260   AGGAUUAUAAUCUGCCCAGAUUAU   3283 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
EU945179.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||||||||||||=|||||||||| targets:849   AGGAUUAUAAUCUGCCCAGAUUAU   872 Target Full Sequence	1.5	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||||||||||||=|||||||||| targets:902   AGGAUUAUAAUCUGCCCAGAUUAU   925 Target Full Sequence	1.5	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||||||||||||=|||||||||| targets:269   AGGAUUAUAAUCUGCCCAGAUUAU   292 Target Full Sequence	1.5	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget
HI406797.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
JB167258.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget
HI406776.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
JB167237.1	ncRNA:23   CCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||=|||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
EZ104714.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   ||||||||||||||*||||||||| targets:42   GGGAUUAUAAUCUAGCCAGAUUAU   65 Target Full Sequence	1.5	TSA: Zea mays contig40371, mRNA sequence	NA	coding protein	psRNATarget
BT069856.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   **|||||||||||||||||||||| targets:627   CAGAUUAUAAUCUACCCAGAUUAU   650 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0305N24 mRNA, complete cds	NA	coding protein	psRNATarget
JB167517.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*||||||||||||=||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUAU   32 Target Full Sequence	1.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
HI407056.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*||||||||||||=||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUAU   32 Target Full Sequence	1.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*||||||||||||=||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAUUAU   32 Target Full Sequence	1.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008649350.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*|||*|||||||||=|||||||| targets:1105   GAGAUAAUAAUCUACUCAGAUUAU   1128 Target Full Sequence	2.5	PREDICTED: Zea mays Short-chain dehydrogenase/reductase SDRA (LOC100273876), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962485.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*|||*|||||||||=|||||||| targets:1003   GAGAUAAUAAUCUACUCAGAUUAU   1026 Target Full Sequence	2.5	Zea mays clone 243099 dehydrogenase/reductase SDR family member 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT069962.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*|||*|||||||||=|||||||| targets:949   GAGAUAAUAAUCUACUCAGAUUAU   972 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0335L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664166.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   |*|*|||||||||*|||||||||| targets:1933   GUGUUUAUAAUCUCCCCAGAUUAU   1956 Target Full Sequence	1.5	PREDICTED: Zea mays trigger factor-like protein TIG, Chloroplastic (LOC103640683), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU958180.1	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||*||||||||*||||||||||* targets:1533   CGGCUUAUAAUCAACCCAGAUUAG   1556 Target Full Sequence	2.5	Zea mays clone 1677156 WD-repeat protein-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301476.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||*||||||||*||||||||||* targets:1532   CGGCUUAUAAUCAACCCAGAUUAG   1555 Target Full Sequence	2.5	Zea mays uncharacterized WD repeat-containing protein C2A9.03-like (LOC103638309), mRNA	NA	coding protein	psRNATarget
AY108826.2	ncRNA:24   CCCUAAUAUUAGAUGGGUCUAAUA   1   *||*||||||||*||||||||||* targets:440   CGGCUUAUAAUCAACCCAGAUUAG   463 Target Full Sequence	2.5	Zea mays PCO135885 mRNA sequence	NA	coding protein	psRNATarget