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BaseInfo

ncRNA ID novel_zma_miR5500
Species Zea mays
Class miRNA
Genome position Chr7:138247123-138247261 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647343;SRR2647385;SRR2647387;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 116 - AGGCUUGUUCGGUUAUUCCCAAUA - 139
Stem-loop(if miRNA) --A              -   C    A  CA       GA          AAAAAUUGAG   AAGUUUGACUU
   GGCUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA          AAG           A
   |||||||||||||| ||| |||| ||  |||||||  ||||||||||          |||           C
   CCGAACAAGCCAAU GAG GUUA GU  ACCUAAC  ACCCUAAUCU          CCC           U
AUC              C   A    G  AC       UC          ---------A   AAACUUAGGGU
Stem-loop sequence AGGCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUGAGAAGAAGUUUGACUUACUUGGGAUUCAAACCCAUCUAAUCCCACUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405848.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||||||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCU   138

0.0 Sequence 3973 from Patent EP2074227 NA coding protein psRNATarget
LQ237978.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||||||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCU   138

0.0 Sequence 3973 from Patent EP2985353 NA coding protein psRNATarget
JB166309.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||||||||||||||||||||
targets:115   UAUUGGGAAUAACCGAACAAGCCU   138

0.0 Sequence 3973 from Patent EP2559767 NA coding protein psRNATarget
LQ237957.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:111   UAUUGGGAAUAACCGAACAAGCCC   134

1.0 Sequence 3952 from Patent EP2985353 NA coding protein psRNATarget
JB166288.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:111   UAUUGGGAAUAACCGAACAAGCCC   134

1.0 Sequence 3952 from Patent EP2559767 NA coding protein psRNATarget
HI405827.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:111   UAUUGGGAAUAACCGAACAAGCCC   134

1.0 Sequence 3952 from Patent EP2074227 NA coding protein psRNATarget
JB166337.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:113   UAUUGGGAAUAACCGAACAAGCCC   136

1.0 Sequence 4001 from Patent EP2559767 NA coding protein psRNATarget
LQ238006.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:113   UAUUGGGAAUAACCGAACAAGCCC   136

1.0 Sequence 4001 from Patent EP2985353 NA coding protein psRNATarget
HI405876.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:113   UAUUGGGAAUAACCGAACAAGCCC   136

1.0 Sequence 4001 from Patent EP2074227 NA coding protein psRNATarget
HI405880.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4005 from Patent EP2074227 NA coding protein psRNATarget
JB166301.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
LQ237962.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
JB166342.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4006 from Patent EP2559767 NA coding protein psRNATarget
LQ237970.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
HI405881.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4006 from Patent EP2074227 NA coding protein psRNATarget
HI405832.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
LQ238010.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4005 from Patent EP2985353 NA coding protein psRNATarget
LQ238011.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4006 from Patent EP2985353 NA coding protein psRNATarget
JB166341.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 4005 from Patent EP2559767 NA coding protein psRNATarget
JB166293.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
HI405840.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:115   UAUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
LQ238016.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:118   UAUUGGGAAUAACCGAACAAGCCC   141

1.0 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
JB166347.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:118   UAUUGGGAAUAACCGAACAAGCCC   141

1.0 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
HI405886.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:118   UAUUGGGAAUAACCGAACAAGCCC   141

1.0 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
EU942632.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:281   UAUUGGGAAUAACCGAACAAGCCC   304

1.0 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
EU957313.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:759   UAUUGGGAAUAACCGAACAAGCCC   782

1.0 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:759   UAUUGGGAAUAACCGAACAAGCCC   782

1.0 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:792   UAUUGGGAAUAACCGAACAAGCCC   815

1.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:792   UAUUGGGAAUAACCGAACAAGCCC   815

1.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
BT018247.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:483   UAUUGGGAAUAACCGAACAAGCCC   506

1.0 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
EU963259.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1035   UAUUGGGAAUAACCGAACAAGCCC   1058

1.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
NM_001174684.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1314   UAUUGGGAAUAACCGAACAAGCCC   1337

1.0 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
BT062563.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1314   UAUUGGGAAUAACCGAACAAGCCC   1337

1.0 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
BT066364.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1544   UAUUGGGAAUAACCGAACAAGCCC   1567

1.0 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
NM_001175812.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1544   UAUUGGGAAUAACCGAACAAGCCC   1567

1.0 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
XM_008669845.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:1821   UAUUGGGAAUAACCGAACAAGCCC   1844

1.0 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:2128   UAUUGGGAAUAACCGAACAAGCCC   2151

1.0 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
XM_020539702.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:2577   UAUUGGGAAUAACCGAACAAGCCC   2600

1.0 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||||*
targets:2557   UAUUGGGAAUAACCGAACAAGCCC   2580

1.0 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
LQ239438.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCG-GA   1
  ||||||||||||||||||||||-||
targets:116   UAUUGGGAAUAACCGAACAAGCUCU   140

3.0 Sequence 5433 from Patent EP2985353 NA coding protein psRNATarget
JB167769.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCG-GA   1
  ||||||||||||||||||||||-||
targets:116   UAUUGGGAAUAACCGAACAAGCUCU   140

3.0 Sequence 5433 from Patent EP2559767 NA coding protein psRNATarget
HI407308.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCG-GA   1
  ||||||||||||||||||||||-||
targets:116   UAUUGGGAAUAACCGAACAAGCUCU   140

3.0 Sequence 5433 from Patent EP2074227 NA coding protein psRNATarget
HI402987.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:124   UAUUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1112 from Patent EP2074227 NA coding protein psRNATarget
JB163448.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:124   UAUUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1112 from Patent EP2559767 NA coding protein psRNATarget
LQ235117.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:124   UAUUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1112 from Patent EP2985353 NA coding protein psRNATarget
AY111036.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:198   UAUUGGGAAUAACCGAACAAGGCCU   222

3.0 Zea mays CL1582_4 mRNA sequence NA coding protein psRNATarget
BT070056.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:864   UAUUGGGAAUAACCGAACAAGACCU   888

3.0 Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds NA coding protein psRNATarget
AY103687.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:1175   UAUUGGGAAUAACCGAACAAGACCU   1199

3.0 Zea mays PCO106710 mRNA sequence NA coding protein psRNATarget
BT068791.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:1368   UAUUGGGAAUAACCGAACAAGUCCU   1392

3.0 Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds NA coding protein psRNATarget
BT086570.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:239   UAUUGGGAAUAACCGAACAAGGCCU   263

3.0 Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds NA coding protein psRNATarget
AY109413.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  |||||||||||||||||||||-|||
targets:1671   UAUUGGGAAUAACCGAACAAGGCCU   1695

3.0 Zea mays CL2362_1 mRNA sequence NA coding protein psRNATarget
LQ237952.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||=|||||||||*
targets:255   UAUUGGGAAUAACUGAACAAGCCC   278

2.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
HI405822.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||=|||||||||*
targets:255   UAUUGGGAAUAACUGAACAAGCCC   278

2.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
JB166283.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||=|||||||||*
targets:255   UAUUGGGAAUAACUGAACAAGCCC   278

2.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
JB166348.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||*||
targets:111   UAUUGGGAAUAACCGAACAAGGCU   134

1.5 Sequence 4012 from Patent EP2559767 NA coding protein psRNATarget
LQ238017.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||*||
targets:111   UAUUGGGAAUAACCGAACAAGGCU   134

1.5 Sequence 4012 from Patent EP2985353 NA coding protein psRNATarget
HI405887.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||*||
targets:111   UAUUGGGAAUAACCGAACAAGGCU   134

1.5 Sequence 4012 from Patent EP2074227 NA coding protein psRNATarget
EU962683.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||*||
targets:1630   UAUUGGGAAUAACCGAACAAGGCU   1653

1.5 Zea mays clone 244714 mRNA sequence NA coding protein psRNATarget
XM_008680050.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||||||||||*||
targets:1756   UAUUGGGAAUAACCGAACAAGGCU   1779

1.5 PREDICTED: Zea mays sphingoid long-chain bases kinase 1 (LOC103653085), mRNA NA coding protein psRNATarget
HI405844.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:114   UUUUGGGAAUAACCGAACAAGCCC   137

1.0 Sequence 3969 from Patent EP2074227 NA coding protein psRNATarget
JB166298.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||*|||||||||||||||||*
targets:114   UAUUGAGAAUAACCGAACAAGCCC   137

2.0 Sequence 3962 from Patent EP2559767 NA coding protein psRNATarget
LQ237967.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||*|||||||||||||||||*
targets:114   UAUUGAGAAUAACCGAACAAGCCC   137

2.0 Sequence 3962 from Patent EP2985353 NA coding protein psRNATarget
HI405837.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||*|||||||||||||||||*
targets:114   UAUUGAGAAUAACCGAACAAGCCC   137

2.0 Sequence 3962 from Patent EP2074227 NA coding protein psRNATarget
LQ237974.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:114   UUUUGGGAAUAACCGAACAAGCCC   137

1.0 Sequence 3969 from Patent EP2985353 NA coding protein psRNATarget
JB166305.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:114   UUUUGGGAAUAACCGAACAAGCCC   137

1.0 Sequence 3969 from Patent EP2559767 NA coding protein psRNATarget
LQ237965.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3960 from Patent EP2985353 NA coding protein psRNATarget
LQ237981.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3976 from Patent EP2985353 NA coding protein psRNATarget
LQ237955.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*||||||||||||||||*
targets:115   UAUUGGAAAUAACCGAACAAGCCC   138

2.0 Sequence 3950 from Patent EP2985353 NA coding protein psRNATarget
JB166296.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3960 from Patent EP2559767 NA coding protein psRNATarget
HI405851.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3976 from Patent EP2074227 NA coding protein psRNATarget
HI405825.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*||||||||||||||||*
targets:115   UAUUGGAAAUAACCGAACAAGCCC   138

2.0 Sequence 3950 from Patent EP2074227 NA coding protein psRNATarget
JB166284.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:115   UAUUAGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
JB166286.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*||||||||||||||||*
targets:115   UAUUGGAAAUAACCGAACAAGCCC   138

2.0 Sequence 3950 from Patent EP2559767 NA coding protein psRNATarget
JB166312.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3976 from Patent EP2559767 NA coding protein psRNATarget
HI405823.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:115   UAUUAGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
LQ237953.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:115   UAUUAGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405835.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:115   UUUUGGGAAUAACCGAACAAGCCC   138

1.0 Sequence 3960 from Patent EP2074227 NA coding protein psRNATarget
EU968099.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:248   UUUUGGGAAUAACCGAACAAGCCC   271

1.0 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT018592.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |||||||||||||*|||||||||*
targets:1120   UAUUGGGAAUAACGGAACAAGCCC   1143

2.5 Zea mays clone EL01N0447E06.d mRNA sequence NA coding protein psRNATarget
EU964623.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:1538   UUUUGGGAAUAACCGAACAAGCCC   1561

1.0 Zea mays clone 280415 sorting nexin 1 mRNA, complete cds NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:2874   UAUUAGGAAUAACCGAACAAGCCC   2897

1.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:2883   UAUUAGGAAUAACCGAACAAGCCC   2906

1.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3709   UAUUAGGAAUAACCGAACAAGCCC   3732

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3733   UAUUAGGAAUAACCGAACAAGCCC   3756

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3787   UAUUAGGAAUAACCGAACAAGCCC   3810

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3781   UAUUAGGAAUAACCGAACAAGCCC   3804

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3789   UAUUAGGAAUAACCGAACAAGCCC   3812

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3776   UAUUAGGAAUAACCGAACAAGCCC   3799

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:3851   UAUUAGGAAUAACCGAACAAGCCC   3874

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:4175   UAUUAGGAAUAACCGAACAAGCCC   4198

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543938.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:311   UUUUGGGAAUAACCGAACAAGCCC   334

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||*||||||||||||||||||*
targets:4271   UAUUAGGAAUAACCGAACAAGCCC   4294

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:311   UUUUGGGAAUAACCGAACAAGCCC   334

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:311   UUUUGGGAAUAACCGAACAAGCCC   334

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543935.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:311   UUUUGGGAAUAACCGAACAAGCCC   334

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676887.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  |*|||||||||||||||||||||*
targets:2666   UUUUGGGAAUAACCGAACAAGCCC   2689

1.0 PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA NA coding protein psRNATarget
EZ074510.1
ncRNA:24   AUA--ACCCUUAUUGGCUUGUUC-GGA   1
  |||--||||||||||||||||||-|||
targets:67   UAUAAUGGGAAUAACCGAACAAGACCU   93

3.0 TSA: Zea mays contig10147, mRNA sequence NA coding protein psRNATarget
BT084790.1
ncRNA:24   AUA--ACCCUUAUUGGCUUGUUC-GGA   1
  |||--||||||||||||||||||-|||
targets:1130   UAUAAUGGGAAUAACCGAACAAGACCU   1156

3.0 Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds NA coding protein psRNATarget
BT066344.1
ncRNA:24   AUA--ACCCUUAUUGGCUUGUUC-GGA   1
  |||--||||||||||||||||||-|||
targets:2969   UAUAAUGGGAAUAACCGAACAAGACCU   2995

3.0 Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds NA coding protein psRNATarget
NM_001175804.1
ncRNA:24   AUA--ACCCUUAUUGGCUUGUUC-GGA   1
  |||--||||||||||||||||||-|||
targets:2969   UAUAAUGGGAAUAACCGAACAAGACCU   2995

3.0 Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA NA coding protein psRNATarget
HI405829.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||||*||||||||||||||||-|||
targets:116   UAUUAGGAAUAACCGAACAAGGCCU   140

3.0 Sequence 3954 from Patent EP2074227 NA coding protein psRNATarget
JB166290.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||||*||||||||||||||||-|||
targets:116   UAUUAGGAAUAACCGAACAAGGCCU   140

3.0 Sequence 3954 from Patent EP2559767 NA coding protein psRNATarget
LQ237959.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||||*||||||||||||||||-|||
targets:116   UAUUAGGAAUAACCGAACAAGGCCU   140

3.0 Sequence 3954 from Patent EP2985353 NA coding protein psRNATarget
JB163547.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*||||||||||||||||||-|||
targets:119   UAAUGGGAAUAACCGAACAAGGCCU   143

3.0 Sequence 1211 from Patent EP2559767 NA coding protein psRNATarget
HI403086.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*||||||||||||||||||-|||
targets:119   UAAUGGGAAUAACCGAACAAGGCCU   143

3.0 Sequence 1211 from Patent EP2074227 NA coding protein psRNATarget
LQ235216.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*||||||||||||||||||-|||
targets:119   UAAUGGGAAUAACCGAACAAGGCCU   143

3.0 Sequence 1211 from Patent EP2985353 NA coding protein psRNATarget
BT018572.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||||*||||||||||||||||-|||
targets:1863   UAUUAGGAAUAACCGAACAAGGCCU   1887

3.0 Zea mays clone EL01N0443D02.d mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*||||||||||||||||||-|||
targets:2518   UAAUGGGAAUAACCGAACAAGGCCU   2542

3.0 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   AUAACCCU-UAUUGGCUUGUUCGGA   1
  *|||||||-|||||||||||||||*
targets:1991   GAUUGGGAUAUAACCGAACAAGCCC   2015

3.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
JB166306.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*|||||||||||||*|||
targets:115   UAUUGGAAAUAACCGAACAACCCU   138

2.5 Sequence 3970 from Patent EP2559767 NA coding protein psRNATarget
LQ237975.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*|||||||||||||*|||
targets:115   UAUUGGAAAUAACCGAACAACCCU   138

2.5 Sequence 3970 from Patent EP2985353 NA coding protein psRNATarget
HI405845.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*|||||||||||||*|||
targets:115   UAUUGGAAAUAACCGAACAACCCU   138

2.5 Sequence 3970 from Patent EP2074227 NA coding protein psRNATarget
AY112156.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||||||*|||||||||||||*|||
targets:174   UAUUGGAAAUAACCGAACAACCCU   197

2.5 Zea mays CL1582_10 mRNA sequence NA coding protein psRNATarget
BT064472.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *|||||*||||||||||||||||*
targets:1443   GAUUGGAAAUAACCGAACAAGCCC   1466

2.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *|||||*||||||||||||||||*
targets:1487   GAUUGGAAAUAACCGAACAAGCCC   1510

2.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *|||||*||||||||||||||||*
targets:1505   GAUUGGAAAUAACCGAACAAGCCC   1528

2.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *|||||*||||||||||||||||*
targets:1519   GAUUGGAAAUAACCGAACAAGCCC   1542

2.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *|||||*||||||||||||||||*
targets:1519   GAUUGGAAAUAACCGAACAAGCCC   1542

2.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
JB163553.1
ncRNA:24   AUA----ACCCUUAUUGGCUUGUUC-GGA   1
  |=|----||||||||||||||||||-|||
targets:120   UGUGCAAUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1217 from Patent EP2559767 NA coding protein psRNATarget
LQ235222.1
ncRNA:24   AUA----ACCCUUAUUGGCUUGUUC-GGA   1
  |=|----||||||||||||||||||-|||
targets:120   UGUGCAAUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1217 from Patent EP2985353 NA coding protein psRNATarget
HI403092.1
ncRNA:24   AUA----ACCCUUAUUGGCUUGUUC-GGA   1
  |=|----||||||||||||||||||-|||
targets:120   UGUGCAAUGGGAAUAACCGAACAAGGCCU   148

3.0 Sequence 1217 from Patent EP2074227 NA coding protein psRNATarget
HI403070.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  *=*||||||||||||||||||-|||
targets:112   GGAUGGGAAUAACCGAACAAGGCCU   136

3.0 Sequence 1195 from Patent EP2074227 NA coding protein psRNATarget
LQ235200.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  *=*||||||||||||||||||-|||
targets:112   GGAUGGGAAUAACCGAACAAGGCCU   136

3.0 Sequence 1195 from Patent EP2985353 NA coding protein psRNATarget
JB163531.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  *=*||||||||||||||||||-|||
targets:112   GGAUGGGAAUAACCGAACAAGGCCU   136

3.0 Sequence 1195 from Patent EP2559767 NA coding protein psRNATarget
HI405821.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*|*||||||||||||||||-|||
targets:115   UAAUAGGAAUAACCGAACAAGACCU   139

3.0 Sequence 3946 from Patent EP2074227 NA coding protein psRNATarget
JB166282.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*|*||||||||||||||||-|||
targets:115   UAAUAGGAAUAACCGAACAAGACCU   139

3.0 Sequence 3946 from Patent EP2559767 NA coding protein psRNATarget
LQ237951.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*|*||||||||||||||||-|||
targets:115   UAAUAGGAAUAACCGAACAAGACCU   139

3.0 Sequence 3946 from Patent EP2985353 NA coding protein psRNATarget
EZ113619.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*|*||||||||||||||||-|||
targets:14   UAAUAGGAAUAACCGAACAAGGCCU   38

3.0 TSA: Zea mays contig49280, mRNA sequence NA coding protein psRNATarget
XM_008651215.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUC-GGA   1
  ||*|*||||||||||||||||-|||
targets:480   UAAUAGGAAUAACCGAACAAGACCU   504

3.0 PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA NA coding protein psRNATarget
XM_008674309.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  ||*|*|||||||||||||=||||*
targets:1200   UAAUAGGAAUAACCGAACGAGCCG   1223

2.5 PREDICTED: Zea mays Protein ABA DEFICIENT 4 chloroplastic (LOC100274357), transcript variant X1, mRNA NA coding protein psRNATarget
EZ092886.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:90   AAUUGAAAAUAACCGAACAAGCCC   113

3.0 TSA: Zea mays contig28535, mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:467   GAUUGAAAAUAACCGAACAAGCCC   490

3.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:806   AAUUGAAAAUAACCGAACAAGCCC   829

3.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT064935.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:858   GAUUGAAAAUAACCGAACAAGCCC   881

3.0 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:920   GAUUGAAAAUAACCGAACAAGCCC   943

3.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:868   GAUUGAAAAUAACCGAACAAGCCC   891

3.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959053.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:866   GAUUGAAAAUAACCGAACAAGCCC   889

3.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:866   GAUUGAAAAUAACCGAACAAGCCC   889

3.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:867   GAUUGAAAAUAACCGAACAAGCCC   890

3.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU965203.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:910   GAUUGAAAAUAACCGAACAAGCCC   933

3.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:910   GAUUGAAAAUAACCGAACAAGCCC   933

3.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:939   GAUUGAAAAUAACCGAACAAGCCC   962

3.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:1069   GAUUGAAAAUAACCGAACAAGCCC   1092

3.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AUAACCCUUAUUGGCUUGUUCGGA   1
  *||||**||||||||||||||||*
targets:1182   GAUUGAAAAUAACCGAACAAGCCC   1205

3.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
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