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BaseInfo

ncRNA ID novel_zma_miR5489
Species Zea mays
Class miRNA
Genome position Chr6:55386098-55386265 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - GAAAUCUAACUUCCUAGAGGAGGU - 24
Stem-loop(if miRNA) -CAG  -G                - G -     UG     CA  UG   CC       C  -  GGA   CG             G
    CC  UAGGAAGUUAGAUUUU C U UUGAC  GUCAA  GC  AAA  UAACUUC UA GA   GGC  UAGGAAGUUAGCU C
    ||  |||||||||||||||| | | |||||  |||||  ||  |||  ||||||| || ||   |||  |||||||||||||
    GG  AUCCUUCAAUCUAAAG G A AACUG  CAGUU  UG  UUU  AUUGAAG AU CU   CCG  AUCCUUCAAUCGA C
UGGA  AG                U G C     GU     --  GU   CU       U  G  -GA   AG             C
Stem-loop sequence CAGCCGUAGGAAGUUAGAUUUUCGUUUGACUGGUCAACAGCUGAAACCUAACUUCCUAGAGGAGGCCGUAGGAAGUUAGCUGCCCAGCUAACUUCCUAGAGCCAGUCGUAUGAAGUUAUCUUUUGGUUUGACUGGUCAACAGGUGAAAUCUAACUUCCUAGAGGAGGU