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BaseInfo

ncRNA ID	novel_zma_miR5482
Species	Zea mays
Class	miRNA
Genome position	Chr6:118536494-118536580 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - AUCUCCAAGAGACUAGUUAAAUGG - 24
Stem-loop(if miRNA)	--         AC  A   A         -----------U    U UU   AUUUAGCUA  CU UUG AGAUGCUCU            AGAC C  A   |||||||||  || ||| |||||||||            |||| |   UAAAUUGAU  GA AAC UCUACGAGA            UCUG G  G GG         CA  G   C         UUCCCGUAGUGU    U UU
Stem-loop sequence	AUUUAGCUAACCUAUUGAAGAUGCUCUUAGACUCUUAGUUGUGUCUUGUGAUGCCCUUAGAGCAUCUCCAAGAGACUAGUUAAAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY109644.1	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   |||||||=|||||||||||||||| targets:265   CCAUUUAGCUAGUCUCUUGGAGAU   288 Target Full Sequence	1.0	Zea mays CL12102_-1 mRNA sequence	NA	coding protein	psRNATarget
NM_001350271.1	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   =|||||||||||||||||||||=| targets:1506   UCAUUUAACUAGUCUCUUGGAGGU   1529 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278902 (LOC100278902), mRNA	NA	coding protein	psRNATarget
EU966387.1	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   =||||||=|||||||||||*|||| targets:1204   UCAUUUAGCUAGUCUCUUGAAGAU   1227 Target Full Sequence	2.5	Zea mays clone 294069 mRNA sequence	NA	coding protein	psRNATarget
EU966387.1	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   =||**||=|||||||*|||||||| targets:1141   UCAGAUAGCUAGUCUGUUGGAGAU   1164 Target Full Sequence	2.5	Zea mays clone 294069 mRNA sequence	NA	coding protein	psRNATarget
XM_008678711.2	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   ||||*||*||||||||||||||*| targets:1285   CCAUAUACCUAGUCUCUUGGAGUU   1308 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551412.1	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   ||||*||*||||||||||||||*| targets:1387   CCAUAUACCUAGUCUCUUGGAGUU   1410 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008678709.2	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   ||||*||*||||||||||||||*| targets:1462   CCAUAUACCUAGUCUCUUGGAGUU   1485 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678710.2	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   ||||*||*||||||||||||||*| targets:1466   CCAUAUACCUAGUCUCUUGGAGUU   1489 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678712.2	ncRNA:24   GGUAAAUUGAUCAGAGAACCUCUA   1   ||||*||*||||||||||||||*| targets:1470   CCAUAUACCUAGUCUCUUGGAGUU   1493 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU972497.1	ncRNA:21   AAAUUGAUCAGAGAACCUCUA   1   |*||=||||||||||||||*| targets:1   UAUAGCUAGUCUCUUGGAGUU   21 Target Full Sequence	2.5	Zea mays clone 382264 mRNA sequence	NA	coding protein	psRNATarget