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BaseInfo

ncRNA ID	novel_zma_miR5480
Species	Zea mays
Class	miRNA
Genome position	Chr6:125587944-125588017 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647385;SRR2647391
Length	24
Mature sequence(if miRNA)	51 - AUGGAUUUAAUCCAGGUAUGGAUU - 74
Stem-loop(if miRNA)	--             A G     -        AAUCC   AUGGAUUUAAUCC G UAUGG AUUGGGUG     A   ||||||||||||| | ||||| ||||||||     U   UACCUAAAUUAGG U GUACC UAACCCAC     A AC             G G     C        ACUCU
Stem-loop sequence	AUGGAUUUAAUCCAGGUAUGGAUUGGGUGAAUCCAUAUCUCACACCCAAUCCCAUGGUGGGAUUAAAUCCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661803.2	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||||*||||||||||||| targets:1362   AAUCCAUACCCGGAUUAAAUCCAU   1385 Target Full Sequence	1.0	PREDICTED: Zea mays protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC103639026), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948994.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||||*||||||||||||| targets:798   AAUCCAUACCCGGAUUAAAUCCAU   821 Target Full Sequence	1.0	Zea mays clone 393087 mRNA sequence	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||=|*||||||||||||| targets:157   AAUCCAUAUCCGGAUUAAAUCCAU   180 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||=|*||||||||||||| targets:157   AAUCCAUAUCCGGAUUAAAUCCAU   180 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||=|*||||||||||||| targets:157   AAUCCAUAUCCGGAUUAAAUCCAU   180 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||=|*||||||||||||| targets:157   AAUCCAUAUCCGGAUUAAAUCCAU   180 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008671212.2	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||||||*|||||||||=||| targets:89   AAUCCAUACCCGGAUUAAAUUCAU   112 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103646487 (LOC103646487), mRNA	NA	coding protein	psRNATarget
XM_020541782.1	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   |||||*||||||||||||||||*| targets:55   AAUCCCUACCUGGAUUAAAUCCCU   78 Target Full Sequence	2.5	PREDICTED: Zea mays SAC3 family protein B-like (LOC103633501), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008655395.2	ncRNA:24   UUAGGUAUGGACCUAAUUUAGGUA   1   ||||||*|*||||||||||||||| targets:809   AAUCCAGAACUGGAUUAAAUCCAU   832 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103633684 (LOC103633684), transcript variant X1, mRNA	NA	coding protein	psRNATarget