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BaseInfo

ncRNA ID novel_zma_miR5479
Species Zea mays
Class miRNA
Genome position Chr10:146240169-146240250 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - CACGGUCCACAAUUAGUUAUGUGU - 24
Stem-loop(if miRNA) --     U      A   GU         CCA  A  -  UGC
  ACAUA CUAAUU UGG  CGUGCCGUG   GC CG UG   C
  ||||| |||||| |||  |||||||||   || || ||
  UGUAU GAUUAA ACC  GCACGGCAC   CG GC AC   C
UG     U      C   UG         --C  -  U  UGA
Stem-loop sequence ACAUAUCUAAUUAUGGGUCGUGCCGUGCCAGCACGUGUGCCCAGUCAUCGGCCCACGGCACGGUCCACAAUUAGUUAUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547541.1
ncRNA:24   UGUGUAUUGAUUAACACCUGGCAC   1
  ||||||||||||||||||=|||||
targets:3336   ACACAUAACUAAUUGUGGGCCGUG   3359

1.5 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget