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BaseInfo

ncRNA ID novel_zma_miR5478
Species Zea mays
Class miRNA
Genome position Chr6:140046737-140046828 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 69 - AAGAUCUAUGGCGCCGAGCUAGGU - 92
Stem-loop(if miRNA) ---A  A          C   C  G    CA       AAUCA  UC
    AG UCUAUGGCGC GAG UA GUGC  CGUUGGC     CG  A
    || |||||||||| ||| || ||||  |||||||     ||
    UC GGGUACCGCG CUC AU CACG  GCGACCG     GC  A
GGUG  -          A   C  A    AG       CGACC  CC
Stem-loop sequence AAGAUCUAUGGCGCCGAGCUAGGUGCCACGUUGGCAAUCACGUCAACCCGCCAGCGCCAGCGGAGCACAUACCUCAGCGCCAUGGGCUGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT068330.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||||||||||||||||||||=||
targets:721   CCCUAGCUCGGCGCCAUAGAUUUU   744

1.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||||||||||
targets:128   ACCGAGCUCGGCGCCAUAGAUCUU   151

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||*||||||||||||||||||||
targets:1220   UCCGAGCUCGGCGCCAUAGAUCUU   1243

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||||||||||
targets:126   ACCGAGCUCGGCGCCAUAGAUCUU   149

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||*||||||||||||||||||||
targets:1218   UCCGAGCUCGGCGCCAUAGAUCUU   1241

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||*||||||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||*||||||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  *||*||||||||||||||||||||
targets:780   UCCGAGCUCGGCGCCAUAGAUCUU   803

0.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
HI405982.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*|*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
JB166443.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*|*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
LQ238112.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*|*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25

1.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

1.0 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

1.0 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:159   ACGUACCUCGGCGCCAUAGAUCUU   182

1.0 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186

1.0 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:163   ACGUACCUCGGCGCCAUAGAUCUU   186

1.0 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:228   ACGUACCUCGGCGCCAUAGAUCUU   251

1.0 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
BT034188.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||*|||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*||||||||||||*|||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:935   ACGUACCUCGGCGCCAUAGAUCUU   958

1.0 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |=*||*||||||||||||||||||
targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24

1.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  |||*=|*|||||||||||||||||
targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312

1.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
EU948532.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:435   AC--GGCUCGGCGUCAUAGAUCUU   456

1.5 Zea mays clone 379687 mRNA sequence NA coding protein psRNATarget
XM_020543999.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:930   AC--GGCUCGGCGUCAUAGAUCUU   951

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544000.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:936   AC--GGCUCGGCGUCAUAGAUCUU   957

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020538144.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ****=|*|||||||||||||||||
targets:103   CAGAGGGUCGGCGCCAUAGAUCUU   126

1.0 PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ****=|*|||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

1.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ****=|*|||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

1.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
XM_020549155.1
ncRNA:24   UGGAUCGAGCCGCGGUAUCUAGAA   1
  ****=|*||||||||||=||||||
targets:5   CAGAGGGUCGGCGCCAUGGAUCUU   28

2.5 PREDICTED: Zea mays extensin-like (LOC109944402), mRNA NA coding protein psRNATarget
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