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BaseInfo

ncRNA ID novel_zma_miR5477
Species Zea mays
Class miRNA
Genome position Chr6:142568722-142568818 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - CAAGAUCUAUGGCGCCGACCCCCG - 24
Stem-loop(if miRNA) --                                  CUG  UA  ACCG
  GGGGUCGGCGCCAUAGAUCUUGGCGCCGACCCCC   GA  GC    G
  ||||||||||||||||||||||||||||||||||   ||  ||
  CCCCAGCCGCGGUAUCUAGAACCGCGGCUGGGGG   CU  CG    A
GC                                  -AA  GC  CCCC
Stem-loop sequence GGGGUCGGCGCCAUAGAUCUUGGCGCCGACCCCCCUGGAUAGCACCGGACCCCGCCGUCAAGGGGGUCGGCGCCAAGAUCUAUGGCGCCGACCCCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668233.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  ||||||||||||||||||||||||
targets:182   CGGGGGUCGGCGCCAUAGAUCUUG   205

0.0 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *||||||||||||||*||||||||
targets:242   GGGGGGUCGGCGCCACAGAUCUUG   265

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *|||||||||||||||||||||||
targets:62   AGGGGGUCGGCGCCAUAGAUCUUG   85

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *|||||||||||||||||||||||
targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *|||||||||||||||||||||||
targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*||||||||||||||||||||||
targets:290   CCGGGGUCGGCGCCAUAGAUCUUG   313

0.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_020538144.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *|*|||||||||||||||||||||
targets:104   AGAGGGUCGGCGCCAUAGAUCUUG   127

0.0 PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA NA coding protein psRNATarget
XM_020549155.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  *|*|||||||||||||=|||||||
targets:6   AGAGGGUCGGCGCCAUGGAUCUUG   29

1.5 PREDICTED: Zea mays extensin-like (LOC109944402), mRNA NA coding protein psRNATarget
XM_008650464.2
ncRNA:24   GCC-CCCAGCCGCGGUAUCUAGAAC   1
  =||-|||||||=||||*||||||||
targets:111   UGGCGGGUCGGUGCCAGAGAUCUUG   135

2.5 PREDICTED: Zea mays uncharacterized LOC103629300 (LOC103629300), mRNA NA coding protein psRNATarget
EU948532.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |**||*||||||=|||||||||||
targets:434   CACGGCUCGGCGUCAUAGAUCUUG   457

2.5 Zea mays clone 379687 mRNA sequence NA coding protein psRNATarget
XM_020543999.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |**||*||||||=|||||||||||
targets:929   CACGGCUCGGCGUCAUAGAUCUUG   952

2.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544000.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |**||*||||||=|||||||||||
targets:935   CACGGCUCGGCGUCAUAGAUCUUG   958

2.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:781   CCGAGCUCGGCGCCAUAGAUCUUG   804

1.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:129   CCGAGCUCGGCGCCAUAGAUCUUG   152

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:1221   CCGAGCUCGGCGCCAUAGAUCUUG   1244

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:127   CCGAGCUCGGCGCCAUAGAUCUUG   150

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:1219   CCGAGCUCGGCGCCAUAGAUCUUG   1242

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:187   CCGAGCUCGGCGCCAUAGAUCUUG   210

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:1278   CCGAGCUCGGCGCCAUAGAUCUUG   1301

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:187   CCGAGCUCGGCGCCAUAGAUCUUG   210

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*||||||||||||||||||
targets:1278   CCGAGCUCGGCGCCAUAGAUCUUG   1301

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:281   CACAUCUCGGCGCCAUAGAUCUUG   304

1.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  =|****||||||||||||||||||
targets:2   UGUACCUCGGCGCCAUAGAUCUUG   25

1.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  ||****||||||||||||||||||
targets:3   CGUACCUCGGCGCCAUAGAUCUUG   26

1.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696

1.0 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696

1.0 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:1755   CACAUCUCGGCGCCAUAGAUCUUG   1778

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:1780   CACAUCUCGGCGCCAUAGAUCUUG   1803

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*****||||||||||||||||||
targets:1787   CACAUCUCGGCGCCAUAGAUCUUG   1810

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
BT068330.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |***|*||||||||||||||=|||
targets:722   CCUAGCUCGGCGCCAUAGAUUUUG   745

2.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
BT034188.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*|||||||||*||||||||
targets:755   CCGAGCUCGGCGCCACAGAUCUUG   778

2.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   GCCCCCAGCCGCGGUAUCUAGAAC   1
  |*|*|*|||||||||*||||||||
targets:755   CCGAGCUCGGCGCCACAGAUCUUG   778

2.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
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