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BaseInfo

ncRNA ID	novel_zma_miR5475
Species	Zea mays
Class	miRNA
Genome position	Chr6:169316985-169317034 [+]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - UUAAGGAACCGCCUGUAGAAAUAC - 24
Stem-loop(if miRNA)	--        -     UG          UUAAGGAA CCGCC  UAGAAAUA   |||||||| |||||  |||||||C   AAUUCUUU GGCGG  AUCUUUAG GG        U     UA
Stem-loop sequence	UUAAGGAACCGCCUGUAGAAAUACGAUUUCUAAUGGCGGUUUUCUUAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235114.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   *||||||||||||||||||||||| targets:34   AUAUUUCUACAGGCGGUUCCUUAA   57 Target Full Sequence	0.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   *||||||||||||||||||||||| targets:34   AUAUUUCUACAGGCGGUUCCUUAA   57 Target Full Sequence	0.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   *||||||||||||||||||||||| targets:34   AUAUUUCUACAGGCGGUUCCUUAA   57 Target Full Sequence	0.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   *|||||||||||||||||=||||| targets:1921   CUAUUUCUACAGGCGGUUUCUUAA   1944 Target Full Sequence	1.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   ||||||=||*|||||||||||||* targets:34   GUAUUUUUAGAGGCGGUUCCUUAU   57 Target Full Sequence	3.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   ||||||=||*|||||||||||||* targets:34   GUAUUUUUAGAGGCGGUUCCUUAU   57 Target Full Sequence	3.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   ||||||=||*|||||||||||||* targets:34   GUAUUUUUAGAGGCGGUUCCUUAU   57 Target Full Sequence	3.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:51   UGAUUUCUACAUGCGGUUCCUUAA   74 Target Full Sequence	1.5	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||**||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUCCUUAA   31 Target Full Sequence	2.0	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:51   UGAUUUCUACAUGCGGUUCCUUAA   74 Target Full Sequence	1.5	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||**||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUCCUUAA   31 Target Full Sequence	2.0	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:51   UGAUUUCUACAUGCGGUUCCUUAA   74 Target Full Sequence	1.5	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||**||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUCCUUAA   31 Target Full Sequence	2.0	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
JB167563.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:10   CGAUUUCUACAUGCGGUUCCUUAA   33 Target Full Sequence	1.5	Sequence 5227 from Patent EP2559767	NA	coding protein	psRNATarget
HI407102.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:10   CGAUUUCUACAUGCGGUUCCUUAA   33 Target Full Sequence	1.5	Sequence 5227 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239232.1	ncRNA:24   CAUAAAGAUGUCCGCCAAGGAAUU   1   **|||||||||*|||||||||||| targets:10   CGAUUUCUACAUGCGGUUCCUUAA   33 Target Full Sequence	1.5	Sequence 5227 from Patent EP2985353	NA	coding protein	psRNATarget
EU944427.1	ncRNA:24   CAU--------AAAGAUGUCCGCCAAGGAAUU   1   |||--------|||||||*|||||||=||||| targets:494   GUACAAAUCAUUUUCUACUGGCGGUUUCUUAA   525 Target Full Sequence	2.5	Zea mays clone 218366 mRNA sequence	NA	coding protein	psRNATarget