Search result

BaseInfo

ncRNA ID	novel_zma_miR5467
Species	Zea mays
Class	miRNA
Genome position	Chr5:71416705-71416826 [+]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	99 - GGACUCCCAAACUAGCCCUUAGGG - 122
Stem-loop(if miRNA)	--  U                -  AU   A  A                       CUCCUU   CU AGGGCUAGUUUGGGAG CC  AAA CC GAGGGGAUUGGAGGGGUUAAAAU      C   || |||||||||||||||| ||  ||| || |||||||||||||||||||||||   GA UCCCGAUCAAACCCUC GG  UUU GG CUCUUCUAAUCUCCCCGAUUUUA      U GG  U                A  -C   A  C                       ACUUAU
Stem-loop sequence	CUUAGGGCUAGUUUGGGAGCCAUAAAACCAGAGGGGAUUGGAGGGGUUAAAAUCUCCUUCUUAUUCAAUUUUAGCCCCUCUAAUCUUCUCCGGAUUUCGGACUCCCAAACUAGCCCUUAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406214.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=|||||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
JB166675.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=|||||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=|||||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=|||||||||||||||||||||* targets:2422   CUCUAAGGGCUAGUUUGGGAGUCA   2445 Target Full Sequence	1.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=|||||||||||||||||||||* targets:2440   CUCUAAGGGCUAGUUUGGGAGUCA   2463 Target Full Sequence	1.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |||||*|||||||||||||||||* targets:1584   CCCUACGGGCUAGUUUGGGAGUCA   1607 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111263.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |=||||||||||||||||||*||* targets:314   CUCUAAGGGCUAGUUUGGGACUCN   337 Target Full Sequence	2.5	Zea mays CL8731_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   *=|||||||||||||||*|||||| targets:2073   AUCUAAGGGCUAGUUUGAGAGUCC   2096 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT067022.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   =*|||||||||||||||*|||||* targets:1322   UGCUAAGGGCUAGUUUGAGAGUCA   1345 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0156K10 mRNA, complete cds	NA	coding protein	psRNATarget
AY105026.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   =*|||||||||||||||*|||||* targets:1263   UGCUAAGGGCUAGUUUGAGAGUCA   1286 Target Full Sequence	2.5	Zea mays PCO062519 mRNA sequence	NA	coding protein	psRNATarget
BT034839.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |*|||*||||||||||*||||||| targets:1290   CACUAUGGGCUAGUUUUGGAGUCC   1313 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022H05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137967.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |*|||*||||||||||*||||||| targets:1290   CACUAUGGGCUAGUUUUGGAGUCC   1313 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192771 (AY111680), mRNA	NA	coding protein	psRNATarget
EU960786.1	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |*|||*||||||||||*||||||| targets:1203   CACUAUGGGCUAGUUUUGGAGUCC   1226 Target Full Sequence	2.5	Zea mays clone 228656 mRNA sequence	NA	coding protein	psRNATarget
XM_008683144.2	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |*|||*||||||||||*||||||| targets:1260   CACUAUGGGCUAGUUUUGGAGUCC   1283 Target Full Sequence	2.5	PREDICTED: Zea mays Synaptotagmin-2 (AY111680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402993.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
JB163454.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654952.2	ncRNA:24   GGGAUUCCCGAUCAAACCCUCAGG   1   |*=|=||*||||||||*||||||| targets:2447   CAUUGAGAGCUAGUUUAGGAGUCC   2470 Target Full Sequence	2.5	PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 10 (LOC103633255), mRNA	NA	coding protein	psRNATarget