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BaseInfo

ncRNA ID novel_zma_miR5462
Species Zea mays
Class miRNA
Genome position Chr5:15348494-15348575 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - CACGGUCCACAAUUAGUUAUGUGU - 24
Stem-loop(if miRNA) --     U      A              CCAACAC   UGC
  ACAUA CUAAUU UGGGCCGUGCCGUG       GUG   C
  ||||| |||||| ||||||||||||||       |||
  UGUAU GAUUAA ACCUGGCACGGCAC       UAC   C
UG     U      C              --CCGAC   UGA
Stem-loop sequence ACAUAUCUAAUUAUGGGCCGUGCCGUGCCAACACGUGUGCCCAGUCAUCAGCCCACGGCACGGUCCACAAUUAGUUAUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547541.1
ncRNA:24   UGUGUAUUGAUUAACACCUGGCAC   1
  ||||||||||||||||||=|||||
targets:3336   ACACAUAACUAAUUGUGGGCCGUG   3359

1.5 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget