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BaseInfo

ncRNA ID	novel_zma_miR5461
Species	Zea mays
Class	miRNA
Genome position	Chr5:18644597-18644665 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647343;SRR2647385;SRR2647386;SRR2647389
Length	24
Mature sequence(if miRNA)	46 - GAUCCAUGGGAGAGAAAUCCCCUU - 69
Stem-loop(if miRNA)	--       -   A   A         C   U  G   GAUCCAU GGG GAG AAUCCCCUU CUA UC A   ||||||| ||| ||| ||||||||| ||| || A   CUAGGUA CCC CUC UUAGGGGAA GAU AG U CU       A   -   C         A   C  U
Stem-loop sequence	GAUCCAUGGGAGAGAAAUCCCCUUCCUAUUCGAAUUGACUAGAAAGGGGAUUCCUCCCCAAUGGAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545246.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   |||||||||*|||*|||||||||| targets:120   AAGGGGAUUCCUCCCCCAUGGAUC   143 Target Full Sequence	2.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ063036.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   ||||||*||*|||||||||||||= targets:239   AAGGGGUUUCCUCUCCCAUGGAUU   262 Target Full Sequence	3.0	TSA: Zea mays contig64158, mRNA sequence	NA	coding protein	psRNATarget
EU974067.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   ||||*|*|||||||||=||||||| targets:798   AAGGAGUUUUCUCUCCUAUGGAUC   821 Target Full Sequence	2.5	Zea mays clone 438891 mRNA sequence	NA	coding protein	psRNATarget
BT018533.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   ||||*|*||||||||||||*|||| targets:1886   AAGGUGUUUUCUCUCCCAUAGAUC   1909 Target Full Sequence	2.5	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
EU241921.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   |||**|*|||||||||=||||||| targets:770   AAGAAGUUUUCUCUCCUAUGGAUC   793 Target Full Sequence	2.5	Zea mays ZCN5 (ZCN5) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112773.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   |||**|*|||||||||=||||||| targets:770   AAGAAGUUUUCUCUCCUAUGGAUC   793 Target Full Sequence	2.5	Zea mays ZCN5 protein (ZCN5), mRNA	NA	coding protein	psRNATarget
AY109450.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:382   GAAUGGAUUCUUCUCCCAUGGAUC   405 Target Full Sequence	2.0	Zea mays CL3959_3 mRNA sequence	NA	coding protein	psRNATarget
EU970324.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:1489   GAAUGGAUUCUUCUCCCAUGGAUC   1512 Target Full Sequence	2.0	Zea mays clone 343352 cell division protein ftsY mRNA, complete cds	NA	coding protein	psRNATarget
BT083928.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:1479   GAAUGGAUUCUUCUCCCAUGGAUC   1502 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0055I18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112262.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:1446   GAAUGGAUUCUUCUCCCAUGGAUC   1469 Target Full Sequence	2.0	Zea mays chloroplast srp54 receptor 1 (csr1), mRNA	NA	coding protein	psRNATarget
AJ549215.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:1482   GAAUGGAUUCUUCUCCCAUGGAUC   1505 Target Full Sequence	2.0	Zea mays mRNA for chloroplast SRP receptor cpFtsY precursor (csr1 gene)	NA	coding protein	psRNATarget
BT065778.1	ncRNA:24   UUCCCCUAAAGAGAGGGUACCUAG   1   =|**|||||*=||||||||||||| targets:1538   GAAUGGAUUCUUCUCCCAUGGAUC   1561 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0089M21 mRNA, complete cds	NA	coding protein	psRNATarget