Search result

BaseInfo

ncRNA ID	novel_zma_miR5456
Species	Zea mays
Class	miRNA
Genome position	Chr5:42314268-42314365 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647386;SRR2647388;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - CAAGAUCUAUGGCGCCGACCCCAU - 24
Stem-loop(if miRNA)	--                                    U  CG   GGG   GGGGUCGGCGCCAUAGAUCUUGGCGCCGACCCCCCU GA  GCG   U   |||||||||||||||||||||||||||||||||||| ||  |||   CCCCAGCCGCGGUAUCUAGAACCGCGGCUGGGGGGA CU  CGU   C UA                                    C  AU   GAC
Stem-loop sequence	GGGGUCGGCGCCAUAGAUCUUGGCGCCGACCCCCCUUGACGGCGGGGUCCAGUGCUAUCCAGGGGGGUCGGCGCCAAGAUCUAUGGCGCCGACCCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544775.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   |*|||||||||||||||||||||| targets:62   AGGGGGUCGGCGCCAUAGAUCUUG   85 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   **|||||||||||||||||||||| targets:182   CGGGGGUCGGCGCCAUAGAUCUUG   205 Target Full Sequence	0.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   =*|||||||||||||*|||||||| targets:242   GGGGGGUCGGCGCCACAGAUCUUG   265 Target Full Sequence	1.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   =*|||||||||||||||||||||| targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   =*|||||||||||||||||||||| targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151 Target Full Sequence	0.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   **|||||||||||||||||||||| targets:290   CCGGGGUCGGCGCCAUAGAUCUUG   313 Target Full Sequence	0.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020549155.1	ncRNA:24   UAC-----CCCAGCCGCGGUAUCUAGAAC   1   |||-----|||||||||||||=||||||| targets:1   AUGUCAGAGGGUCGGCGCCAUGGAUCUUG   29 Target Full Sequence	1.5	PREDICTED: Zea mays extensin-like (LOC109944402), mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   |**||||||||||||||||||||| targets:104   AGAGGGUCGGCGCCAUAGAUCUUG   127 Target Full Sequence	0.0	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   ||||------|*|||||||||||||||||| targets:123   AUGGAACCGAGCUCGGCGCCAUAGAUCUUG   152 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UA--CCCCAGCCGCGGUAUCUAGAAC   1   ||--|*|*|||||||||||||||||| targets:1219   AUCCGAGCUCGGCGCCAUAGAUCUUG   1244 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   ||||------|*|||||||||||||||||| targets:121   AUGGAACCGAGCUCGGCGCCAUAGAUCUUG   150 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UA--CCCCAGCCGCGGUAUCUAGAAC   1   ||--|*|*|||||||||||||||||| targets:1217   AUCCGAGCUCGGCGCCAUAGAUCUUG   1242 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   ||||------|*|||||||||||||||||| targets:181   AUGGAACCGAGCUCGGCGCCAUAGAUCUUG   210 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UA--CCCCAGCCGCGGUAUCUAGAAC   1   ||--|*|*|||||||||||||||||| targets:1276   AUCCGAGCUCGGCGCCAUAGAUCUUG   1301 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   ||||------|*|||||||||||||||||| targets:181   AUGGAACCGAGCUCGGCGCCAUAGAUCUUG   210 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UA--CCCCAGCCGCGGUAUCUAGAAC   1   ||--|*|*|||||||||||||||||| targets:1276   AUCCGAGCUCGGCGCCAUAGAUCUUG   1301 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650464.2	ncRNA:24   UACC--CCAGCCGCGGUAUCUAGAAC   1   =|||--||||||=||||*|||||||| targets:110   GUGGCGGGUCGGUGCCAGAGAUCUUG   135 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103629300 (LOC103629300), mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UA--CCCCAGCCGCGGUAUCUAGAAC   1   ||--|*|*|||||||||||||||||| targets:779   AUCCGAGCUCGGCGCCAUAGAUCUUG   804 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
EU948532.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ***||*||||||=||||||||||| targets:434   CACGGCUCGGCGUCAUAGAUCUUG   457 Target Full Sequence	2.5	Zea mays clone 379687 mRNA sequence	NA	coding protein	psRNATarget
XM_020543999.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ***||*||||||=||||||||||| targets:929   CACGGCUCGGCGUCAUAGAUCUUG   952 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544000.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ***||*||||||=||||||||||| targets:935   CACGGCUCGGCGUCAUAGAUCUUG   958 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA	NA	coding protein	psRNATarget
BT068330.1	ncRNA:24   UACC-------CCAGCCGCGGUAUCUAGAAC   1   =|||-------|*||||||||||||||=||| targets:715   GUGGCUCCCUAGCUCGGCGCCAUAGAUUUUG   745 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   **|***|||||||||||||||||| targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   **|***|||||||||||||||||| targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   **|***|||||||||||||||||| targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86 Target Full Sequence	1.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:281   CACAUCUCGGCGCCAUAGAUCUUG   304 Target Full Sequence	1.0	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:2   UGUACCUCGGCGCCAUAGAUCUUG   25 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:3   CGUACCUCGGCGCCAUAGAUCUUG   26 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:164   CGUACCUCGGCGCCAUAGAUCUUG   187 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:164   CGUACCUCGGCGCCAUAGAUCUUG   187 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:229   CGUACCUCGGCGCCAUAGAUCUUG   252 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:936   CGUACCUCGGCGCCAUAGAUCUUG   959 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696 Target Full Sequence	1.0	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:1755   CACAUCUCGGCGCCAUAGAUCUUG   1778 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:1780   CACAUCUCGGCGCCAUAGAUCUUG   1803 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UACCCCAGCCGCGGUAUCUAGAAC   1   ******|||||||||||||||||| targets:1787   CACAUCUCGGCGCCAUAGAUCUUG   1810 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   =|||------|*|||||||||*|||||||| targets:749   GUGGAACCGAGCUCGGCGCCACAGAUCUUG   778 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:24   UACC------CCAGCCGCGGUAUCUAGAAC   1   =|||------|*|||||||||*|||||||| targets:749   GUGGAACCGAGCUCGGCGCCACAGAUCUUG   778 Target Full Sequence	2.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget