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BaseInfo

ncRNA ID novel_zma_miR5455
Species Zea mays
Class miRNA
Genome position Chr5:52889081-52889133 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 30 - CCGAGCCUGGCUGGAGCAUCUGCU - 53
Stem-loop(if miRNA) --   AG  UG C     C      UU
  CCG  CC  G UGGAG AUCUGC  C
  |||  ||  | ||||| ||||||  C
  GGC  GG  C GCCUC UAGACG  U
CU   -A  GU A     -      CG
Stem-loop sequence CCGAGCCUGGCUGGAGCAUCUGCUUCCUGCGCAGAUCUCCGACUGGGACGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU952191.1
ncRNA:24   UCGUCUACGAGGUCGGUCCGAGCC   1
  =|*|||||||||||||||||*|||
targets:437   GGAAGAUGCUCCAGCCAGGCCCGG   460

1.5 Zea mays clone 1219268 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU952065.1
ncRNA:24   UCGUCUACGAGGUCGGUCCGAGCC   1
  =|||*|||||||||||||||*|||
targets:1103   GGCACAUGCUCCAGCCAGGCCCGG   1126

1.5 Zea mays clone 1155576 hypothetical protein mRNA, complete cds NA coding protein psRNATarget