Search result

BaseInfo

ncRNA ID	novel_zma_miR5450
Species	Zea mays
Class	miRNA
Genome position	Chr5:156551311-156551437 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	104 - CCCCUCUAGGCGACUUUCAAGCCU - 127
Stem-loop(if miRNA)	--          C A      AG       UG    CAGA   G      G   U  AA    CUG   CCCCUCUAGG G CUUUCA  CCUGCUC  CUGC    UGA CCUGCU CUG GU  GUGA   A   |||||||||| | ||||||  |||||||  ||||    ||| |||||| ||| ||  ||||   GGGGAGAUCC C GAGAGU  GGACGGG  GACG    ACU GGACGA GAC CG  UACU   A GG          A -      GA       UG    -AUA   G      -   -  -G    AAG
Stem-loop sequence	CCCCUCUAGGCGACUUUCAAGCCUGCUCUGCUGCCAGAUGAGCCUGCUGCUGUGUAAGUGACUGAAGAAUCAUGGCCAGAGCAGGGUCAAUAGCAGGUGGGCAGGAGUGAGAGCACCUAGAGGGGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068427.2	ncRNA:24   UCCGAACUUU-CAGCGGAUCUCCCC   1   ****||||||-|||||||||||||| targets:429   CCAAUUGAAAAGUCGCCUAGAGGGG   453 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0184E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT084659.2	ncRNA:24   UCCGAACUUUCAGCGGAUCUCCCC   1   ****||||*||||||||||||||| targets:1010   CCAAUUGAUAGUCGCCUAGAGGGG   1033 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153H03 mRNA, complete cds	NA	coding protein	psRNATarget
BT062837.2	ncRNA:24   UCCGAACUUUCAGCGGAUCUCCCC   1   |***|||||||||*|||||||||| targets:1382   AAUAUUGAAAGUCACCUAGAGGGG   1405 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0373F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542827.1	ncRNA:24   UCCGAACUUUCAGCGGAUCUCCCC   1   *||--||||||||||||||||*|| targets:734   CGG--UGAAAGUCGCCUAGAGAGG   755 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635645 (LOC103635645), mRNA	NA	coding protein	psRNATarget
XM_020542043.1	ncRNA:24   UCCGAACUUUCAGCGGAUCUC-CCC   1   |**=*||||||||||||||||-||| targets:2320   AAUUGUGAAAGUCGCCUAGAGAGGG   2344 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100278859 (LOC100278859), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542042.1	ncRNA:24   UCCGAACUUUCAGCGGAUCUC-CCC   1   |**=*||||||||||||||||-||| targets:2411   AAUUGUGAAAGUCGCCUAGAGAGGG   2435 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100278859 (LOC100278859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542041.1	ncRNA:24   UCCGAACUUUCAGCGGAUCUC-CCC   1   |**=*||||||||||||||||-||| targets:2417   AAUUGUGAAAGUCGCCUAGAGAGGG   2441 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100278859 (LOC100278859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670481.2	ncRNA:24   UCCGAACUUUCAGCGGAUCUCCCC   1   ||---||||||||||*|||||||| targets:2686   AG---UGAAAGUCGCAUAGAGGGG   2706 Target Full Sequence	1.5	PREDICTED: Zea mays protein MAIN-LIKE 1-like (LOC103645774), mRNA	NA	coding protein	psRNATarget
EU948909.1	ncRNA:24   UCCGAACUUUCAGCGGAUCUCCCC   1   |*||*|||*|*||||||||||||| targets:88   AUGCCUGAUAAUCGCCUAGAGGGG   111 Target Full Sequence	2.0	Zea mays clone 389567 mRNA sequence	NA	coding protein	psRNATarget