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BaseInfo

ncRNA ID	novel_zma_miR5447
Species	Zea mays
Class	miRNA
Genome position	Chr5:220409859-220409946 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647385
Length	24
Mature sequence(if miRNA)	1 - AUCAAUCCCCUCCAAUCCAUAUGA - 24
Stem-loop(if miRNA)	--          AG         --------     UUUCAAUCC  A   AUAUGGAUUG  GGGGAUUGA        GGGGG         CU G   ||||||||||  |||||||||        |||||         ||   UAUACCUAAC  CCCCUAACU        CCUCC         GA U AG          CU         AUGCCUAA     UUUAAAACU  A
Stem-loop sequence	AUAUGGAUUGAGGGGGAUUGAGGGGGUUUCAAUCCCUAGUAAGUCAAAAUUUCCUCCAAUCCGUAUCAAUCCCCUCCAAUCCAUAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241947.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	0.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	0.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	0.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:36   CCAUAUGGAUUGGAGGGGAUUGAU   59 Target Full Sequence	0.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	0.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	0.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	0.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:782   CCAUAUGGAUUGGAGGGGAUUGAU   805 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:398   CCAUAUGGAUUGGAGGGGAUUGAU   421 Target Full Sequence	0.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT041645.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1252   CCAUAUGGAUUGGAGGGGAUUGAU   1275 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1137   CCAUAUGGAUUGGAGGGGAUUGAU   1160 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT085188.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1293   CCAUAUGGAUUGGAGGGGAUUGAU   1316 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1169   CCAUAUGGAUUGGAGGGGAUUGAU   1192 Target Full Sequence	0.0	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1006   CCAUAUGGAUUGGAGGGGAUUGAU   1029 Target Full Sequence	0.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU959771.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1248   CCAUAUGGAUUGGAGGGGAUUGAU   1271 Target Full Sequence	0.0	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUGAU   1564 Target Full Sequence	0.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUGAU   1564 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   AG-UAUACCUAACCUCCCCUAACUA   1   ||-|||||||||||||||||||||| targets:2673   UCUAUAUGGAUUGGAGGGGAUUGAU   2697 Target Full Sequence	0.0	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
BT042625.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||||||||||||=| targets:772   CCAUAUGGAUUGGAGGGGAUUGGU   795 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0379P04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548795.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||||||||||||=| targets:1312   CCAUAUGGAUUGGAGGGGAUUGGU   1335 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100275326 (LOC100275326), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944315.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||* targets:108   CCAUAUGGAUUGGAGGGGAUUGAG   131 Target Full Sequence	1.0	Zea mays clone 210152 mRNA sequence	NA	coding protein	psRNATarget
NM_001350187.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||||||||||||||||||* targets:1561   CCAUAUGGAUUGGAGGGGAUUGAG   1584 Target Full Sequence	1.0	Zea mays mTERF family protein (LOC100283286), mRNA	NA	coding protein	psRNATarget
BT066512.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||=||||||||||||||||||* targets:1919   GCAUGUGGAUUGGAGGGGAUUGAA   1942 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0013P08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350033.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||=||||||||||||||||||* targets:2828   GCAUGUGGAUUGGAGGGGAUUGAA   2851 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001350032.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||=||||||||||||||||||* targets:2853   GCAUGUGGAUUGGAGGGGAUUGAA   2876 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:322   CCAUAUGUAUUGGAGGGGAUUGAU   345 Target Full Sequence	1.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
BT065205.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   ||||||||||||||||||*||||* targets:840   UCAUAUGGAUUGGAGGGGUUUGAG   863 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034C21 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:862   CCAUAUGUAUUGGAGGGGAUUGAU   885 Target Full Sequence	1.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:859   CCAUAUGUAUUGGAGGGGAUUGAU   882 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:889   CCAUAUGUAUUGGAGGGGAUUGAU   912 Target Full Sequence	1.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:889   CCAUAUGUAUUGGAGGGGAUUGAU   912 Target Full Sequence	1.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT086618.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   ||||||||||||||||||*||||* targets:882   UCAUAUGGAUUGGAGGGGUUUGAG   905 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0192A03 mRNA, complete cds	NA	coding protein	psRNATarget
BT040693.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   ||||||||||||||||||*||||* targets:911   UCAUAUGGAUUGGAGGGGUUUGAG   934 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0118E22 mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||||||*|||||||||||||||| targets:1161   CCAUAUGUAUUGGAGGGGAUUGAU   1184 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT043207.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   ||||||||||||||||||*||||* targets:1669   UCAUAUGGAUUGGAGGGGUUUGAG   1692 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0121A04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148861.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   ||||||||||||||||||*||||* targets:1669   UCAUAUGGAUUGGAGGGGUUUGAG   1692 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274503 (CL13054_1), mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||*||||||||||| targets:1902   CCAUAUGGAUUGAAGGGGAUUGAU   1925 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ090705.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *=||=||||||||||||||||||* targets:129   GUAUGUGGAUUGGAGGGGAUUGAA   152 Target Full Sequence	1.0	TSA: Zea mays contig26352, mRNA sequence	NA	coding protein	psRNATarget
BT035508.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||||*||||||||* targets:1302   CCAUAUGGAUUGGAUGGGAUUGAA   1325 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066P20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008648001.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||*||||||||||* targets:3974   CCAUAUGGAUUGAAGGGGAUUGAG   3997 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648000.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||||*||||||||||* targets:4068   CCAUAUGGAUUGAAGGGGAUUGAG   4091 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682725.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||=||||||||||*|||||||* targets:290   CCAUGUGGAUUGGAGUGGAUUGAG   313 Target Full Sequence	2.5	PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU948993.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||*|||||*||||||||||| targets:528   CCAUAUAGAUUGAAGGGGAUUGAU   551 Target Full Sequence	2.5	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
BT037847.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|||||||||*||||||||*|||| targets:1228   CCAUAUGGAUCGGAGGGGAAUGAU   1251 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0199C24 mRNA, complete cds	NA	coding protein	psRNATarget
EU967408.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   |=|*||||||||||*||||||||* targets:809   UUACAUGGAUUGGAUGGGAUUGAA   832 Target Full Sequence	2.5	Zea mays clone 302604 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150851.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   |=|*||||||||||*||||||||* targets:809   UUACAUGGAUUGGAUGGGAUUGAA   832 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277218 (cl4730_1), mRNA	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:27   ACACAUGGAUUGGAUGGGAUUGAA   50 Target Full Sequence	2.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1060   ACACAUGGAUUGGAUGGGAUUGAA   1083 Target Full Sequence	2.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1060   ACACAUGGAUUGGAUGGGAUUGAA   1083 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1064   ACACAUGGAUUGGAUGGGAUUGAA   1087 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1064   ACACAUGGAUUGGAUGGGAUUGAA   1087 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1351   ACACAUGGAUUGGAUGGGAUUGAA   1374 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *||*||||||||||*||||||||* targets:1555   ACACAUGGAUUGGAUGGGAUUGAA   1578 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   AGUAUACCUAACCUCCCCUAACUA   1   *|=*|*|||||||||||||||||* targets:361   ACGAAGGGAUUGGAGGGGAUUGAG   384 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget