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BaseInfo

ncRNA ID	novel_zma_miR5444
Species	Zea mays
Class	miRNA
Genome position	Chr3:23950805-23950861 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	34 - ACUAUUAGUUAGACUGUUUGGAUG - 57
Stem-loop(if miRNA)	--            A     UG   --  C   ACUAUUAGUUAG CUGUU  GAU  GU U   |||||||||||| |||||  |||  ||   UGAUAAUCAAUC GACGA  UUA  CG U UU            -     UU   AU  G
Stem-loop sequence	ACUAUUAGUUAGACUGUUUGGAUGUCUUGGCUAAUUUUAGCAGCUAACUAAUAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545827.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   |||=|||||||||||=|||||||| targets:974   CAUUCAAACAGUCUAGCUAAUAGU   997 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
DQ244933.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ||||||||=||||||=|||||||| targets:696   CAUCCAAAUAGUCUAGCUAAUAGU   719 Target Full Sequence	2.5	Zea mays clone 11846 mRNA sequence	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ||||||||||*||||=|||||||| targets:714   CAUCCAAACAAUCUAGCUAAUAGU   737 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066299.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ||||||||||*||||=|||||||| targets:1245   CAUCCAAACACUCUAGCUAAUAGU   1268 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ||||||||||*||||=|||||||| targets:726   CAUCCAAACAAUCUAGCUAAUAGU   749 Target Full Sequence	2.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ||||||||||*||||=|||||||| targets:544   CAUCCAAACAAUCUAGCUAAUAGU   567 Target Full Sequence	2.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538936.1	ncRNA:24   GUAGGUUUGUCAGAUU-GAUUAUCA   1   =|||=|||||||||||-|||||||| targets:1316   UAUCUAAACAGUCUAAGCUAAUAGU   1340 Target Full Sequence	3.0	PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679129.2	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   ==||=|||=||||||*|||||||| targets:1442   UGUCUAAAUAGUCUAUCUAAUAGU   1465 Target Full Sequence	2.5	PREDICTED: Zea mays auxin response factor 75 (LOC100283409), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541848.1	ncRNA:24   GUAGGUUUGUCAGAUUGAUUAUCA   1   =|||-|||||*||||=|||||||| targets:9145   UAUC-AAACACUCUAGCUAAUAGU   9167 Target Full Sequence	2.5	PREDICTED: Zea mays putative bZIP transcription factor superfamily protein (bZIP108), transcript variant X1, mRNA	NA	coding protein	psRNATarget