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BaseInfo

ncRNA ID	novel_zma_miR5436
Species	Zea mays
Class	miRNA
Genome position	Chr3:178120733-178120896 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAUGGAUCAGAUGGUUUACUUGCA - 24
Stem-loop(if miRNA)	--    C   A                 CG     C  C       C  AUUUAACACUUAAACCCUUCCACCACCA  UCAAUAAUCUUUAUAAA   CAAG AAA CAUCUGAUCCAUUAGAU  UGGUC AA CGUAGGU AC                            GC                 A   |||| ||| |||||||||||||||||  ||||| || ||||||| ||                            ||   GUUC UUU GUAGACUAGGUAAUCUA  GCUAG UU GUAUCUA UG                            UG                 A AC    A   G                 AU     A  A       -  ---------------------------C  GUACCAAACGAUCCCAA
Stem-loop sequence	CAAGCAAAACAUCUGAUCCAUUAGAUCGUGGUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCCUAGCAAACCAUGGUCGUAUCUAUGAUUAGAUCGUAAUCUAAUGGAUCAGAUGGUUUACUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235145.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||||||||||||||=|||||| targets:5   UGCAAGUAAACCAUCUGGUCCAUU   28 Target Full Sequence	1.5	Sequence 1140 from Patent EP2985353	NA	coding protein	psRNATarget
JB163476.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||||||||||||||=|||||| targets:5   UGCAAGUAAACCAUCUGGUCCAUU   28 Target Full Sequence	1.5	Sequence 1140 from Patent EP2559767	NA	coding protein	psRNATarget
HI403015.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||||||||||||||=|||||| targets:5   UGCAAGUAAACCAUCUGGUCCAUU   28 Target Full Sequence	1.5	Sequence 1140 from Patent EP2074227	NA	coding protein	psRNATarget
HI403344.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=|||||||||=||| targets:28   UGCAAGUAAAUCAUCUGAUCUAUU   51 Target Full Sequence	2.5	Sequence 1469 from Patent EP2074227	NA	coding protein	psRNATarget
JB163805.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=|||||||||=||| targets:28   UGCAAGUAAAUCAUCUGAUCUAUU   51 Target Full Sequence	2.5	Sequence 1469 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235474.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=|||||||||=||| targets:28   UGCAAGUAAAUCAUCUGAUCUAUU   51 Target Full Sequence	2.5	Sequence 1469 from Patent EP2985353	NA	coding protein	psRNATarget
JB163734.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=||||||||=|||| targets:28   UGCAAGUAAAUCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1398 from Patent EP2559767	NA	coding protein	psRNATarget
HI403273.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=||||||||=|||| targets:28   UGCAAGUAAAUCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1398 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235403.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||||||=||||||||=|||| targets:28   UGCAAGUAAAUCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1398 from Patent EP2985353	NA	coding protein	psRNATarget
HI403426.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50 Target Full Sequence	1.0	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50 Target Full Sequence	1.0	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
JB163887.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:27   UGCAAGCAAACCAUCUGAUCCAUU   50 Target Full Sequence	1.0	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
JB163917.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52 Target Full Sequence	1.0	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
HI403456.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52 Target Full Sequence	1.0	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235586.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:29   UGCAAGCAAACCAUCUGAUCCAUU   52 Target Full Sequence	1.0	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235063.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*|||||||||||||||||||||| targets:36   UACAAGUAAACCAUCUGAUCCAUU   59 Target Full Sequence	0.0	Sequence 1058 from Patent EP2985353	NA	coding protein	psRNATarget
JB163394.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*|||||||||||||||||||||| targets:36   UACAAGUAAACCAUCUGAUCCAUU   59 Target Full Sequence	0.0	Sequence 1058 from Patent EP2559767	NA	coding protein	psRNATarget
HI402933.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*|||||||||||||||||||||| targets:36   UACAAGUAAACCAUCUGAUCCAUU   59 Target Full Sequence	0.0	Sequence 1058 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:829   UGCAAGCAAACCAUCUGAUCCAUU   852 Target Full Sequence	1.0	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||||||| targets:829   UGCAAGCAAACCAUCUGAUCCAUU   852 Target Full Sequence	1.0	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163400.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1064 from Patent EP2559767	NA	coding protein	psRNATarget
HI403187.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||=|||| targets:28   UGCAAGCAAACCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235069.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1064 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||=|||| targets:28   UGCAAGCAAACCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
HI402939.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1064 from Patent EP2074227	NA	coding protein	psRNATarget
JB163648.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||||||||||=|||| targets:28   UGCAAGCAAACCAUCUGAUUCAUU   51 Target Full Sequence	2.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235247.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1242 from Patent EP2985353	NA	coding protein	psRNATarget
JB163578.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1242 from Patent EP2559767	NA	coding protein	psRNATarget
HI403117.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||=|||*||||||||||||||||| targets:28   UGUAAGCAAACCAUCUGAUCCAUU   51 Target Full Sequence	1.0	Sequence 1242 from Patent EP2074227	NA	coding protein	psRNATarget
BT066599.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||=|||||||||||| targets:670   UGCAAGCAAACUAUCUGAUCCAUU   693 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664646.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*|||||||=||||||||| targets:231   UGCAAGCAAACCAUUUGAUCCAUU   254 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008664645.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*|||||||=||||||||| targets:231   UGCAAGCAAACCAUUUGAUCCAUU   254 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008664644.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*|||||||=||||||||| targets:231   UGCAAGCAAACCAUUUGAUCCAUU   254 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646929.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||=|||||||||||| targets:2290   UGCAAGCAAACUAUCUGAUCCAUU   2313 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646930.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||||=|||||||||||| targets:2299   UGCAAGCAAACUAUCUGAUCCAUU   2322 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X4, mRNA	NA	coding protein	psRNATarget
LQ235277.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||*|||||||||||||| targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51 Target Full Sequence	2.0	Sequence 1272 from Patent EP2985353	NA	coding protein	psRNATarget
JB163608.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||*|||||||||||||| targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51 Target Full Sequence	2.0	Sequence 1272 from Patent EP2559767	NA	coding protein	psRNATarget
HI403147.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||||||*||*|||||||||||||| targets:28   UGCAAGCAAUCCAUCUGAUCCAUU   51 Target Full Sequence	2.0	Sequence 1272 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||*||||||||||*||||||| targets:1681   UGCAAAUAAACCAUCUAAUCCAUU   1704 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget
JB163778.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||**|||=||||||||||||| targets:28   UGCAAACAAAUCAUCUGAUCCAUU   51 Target Full Sequence	3.0	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
HI403317.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||**|||=||||||||||||| targets:28   UGCAAACAAAUCAUCUGAUCCAUU   51 Target Full Sequence	3.0	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235447.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |||||**|||=||||||||||||| targets:28   UGCAAACAAAUCAUCUGAUCCAUU   51 Target Full Sequence	3.0	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*||||*|||||||||*||||||| targets:28   UACAAGCAAACCAUCUAAUCCAUU   51 Target Full Sequence	2.5	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
HI403395.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*||||*|||||||||*||||||| targets:28   UACAAGCAAACCAUCUAAUCCAUU   51 Target Full Sequence	2.5	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163856.1	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   |*||||*|||||||||*||||||| targets:28   UACAAGCAAACCAUCUAAUCCAUU   51 Target Full Sequence	2.5	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   ACGUUCAUUUGGUAGACUAGGUAA   1   ||*|||*|||||||||*||||||| targets:1655   UGAAAGCAAACCAUCUUAUCCAUU   1678 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget