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BaseInfo

ncRNA ID novel_zma_miR5435
Species Zea mays
Class miRNA
Genome position Chr4:48601362-48601490 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 1 - UUUUGUGACUCCCAAACUAGCCCU - 24
Stem-loop(if miRNA) --              C  AAAU  C          AG     AG       CC          A
  GGCUAGUUUGGGAG UA    AC GGAGGGGAUU  AGGGG  AAAAUCC  UUCUUAUUCA A
  |||||||||||||| ||    || ||||||||||  |||||  |||||||  ||||||||||
  CCGAUCAAACCCUC GU    UG CCUCCCCUAA  UCCCC  UUUUAGG  AAGAAUAAGU A
UC              A  GUUU  A          CA     -G       UA          U
Stem-loop sequence GGCUAGUUUGGGAGCUAAAAUACCGGAGGGGAUUAGAGGGGAGAAAAUCCCCUUCUUAUUCAAAAUUGAAUAAGAAAUGGAUUUUGCCCCUACAAUCCCCUCCAGUUUUGUGACUCCCAAACUAGCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235123.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||||||||||||||||||||||||
targets:1   AGGGCUAGUUUGGGAGUCACAAAA   24

0.0 Sequence 1118 from Patent EP2985353 NA coding protein psRNATarget
HI402993.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||||||||||||||||||||||||
targets:1   AGGGCUAGUUUGGGAGUCACAAAA   24

0.0 Sequence 1118 from Patent EP2074227 NA coding protein psRNATarget
JB163454.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||||||||||||||||||||||||
targets:1   AGGGCUAGUUUGGGAGUCACAAAA   24

0.0 Sequence 1118 from Patent EP2559767 NA coding protein psRNATarget
EU973182.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||||||||||||||||*|||||||
targets:1197   AGGGCUAGUUUGGGAGCCACAAAA   1220

1.5 Zea mays clone 394629 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151652.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||||||||||||||||*|||||||
targets:1197   AGGGCUAGUUUGGGAGCCACAAAA   1220

1.5 Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA NA coding protein psRNATarget
XM_008666769.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  *||||||||||||||||||||||*
targets:1589   CGGGCUAGUUUGGGAGUCACAAAC   1612

1.0 PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666769.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  =|||||||||||*|||||||||||
targets:1527   GGGGCUAGUUUGAGAGUCACAAAA   1550

1.5 PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA NA coding protein psRNATarget
AY109112.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |||||||||*||||||*|||||||
targets:870   AGGGCUAGUCUGGGAGCCACAAAA   893

2.5 Zea mays PCO134243 mRNA sequence NA coding protein psRNATarget
BT065170.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |*||||||||||||||*|||||||
targets:598   AAGGCUAGUUUGGGAGCCACAAAA   621

1.5 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008670893.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |*||||||||||||||*|||||||
targets:1478   AAGGCUAGUUUGGGAGCCACAAAA   1501

1.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |*||||||||||||||*|||||||
targets:1498   AAGGCUAGUUUGGGAGCCACAAAA   1521

1.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |*||||||||||||||*|||||||
targets:1522   AAGGCUAGUUUGGGAGCCACAAAA   1545

1.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  |*||||||||||||||*|||||||
targets:1555   AAGGCUAGUUUGGGAGCCACAAAA   1578

1.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537662.1
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  =*||||||||||||||*|||||||
targets:11589   GAGGCUAGUUUGGGAGCCACAAAA   11612

1.5 PREDICTED: Zea mays uncharacterized LOC100381565 (LOC100381565), transcript variant X1, mRNA NA coding protein psRNATarget
BT063389.1
ncRNA:24   UCC------CGAUCAAACCCUCAGUGUUUU   1
  |||------||||||||||||||||*||||
targets:1466   AGGAUUAAAGCUAGUUUGGGAGUCAAAAAA   1495

1.5 Zea mays full-length cDNA clone ZM_BFc0059C06 mRNA, complete cds NA coding protein psRNATarget
XM_008651784.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||*||||*||||||||*|||||||
targets:644   AGUGCUAAUUUGGGAGCCACAAAA   667

2.5 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008651781.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||*||||*||||||||*|||||||
targets:644   AGUGCUAAUUUGGGAGCCACAAAA   667

2.5 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008651780.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||*||||*||||||||*|||||||
targets:644   AGUGCUAAUUUGGGAGCCACAAAA   667

2.5 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651782.2
ncRNA:24   UCCCGAUCAAACCCUCAGUGUUUU   1
  ||*||||*||||||||*|||||||
targets:644   AGUGCUAAUUUGGGAGCCACAAAA   667

2.5 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA NA coding protein psRNATarget
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