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BaseInfo

ncRNA ID	novel_zma_miR5434
Species	Zea mays
Class	miRNA
Genome position	Chr3:188049468-188049556 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	66 - ACCCGGAGGGGAUUGAAGAGGCUA - 89
Stem-loop(if miRNA)	--  C            A  A         -             A   AC CGGAGGGGAUUG AG GGCUAAAAU UCCUUCUUAUUCA A   || |||||||||||| || ||||||||| |||||||||||||   UG GUCUCCCCUAAC UC CCGAUUUUA AGGAGGAAUAAGU A UU  A            C  C         G             U
Stem-loop sequence	ACCCGGAGGGGAUUGAAGAGGCUAAAAUUCCUUCUUAUUCAAAAUUGAAUAAGGAGGAGAUUUUAGCCCCUCCAAUCCCCUCUGAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   |||||*||||||||||||||||*| targets:1113   UAGCCCCUUCAAUCCCCUCCGGUU   1136 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   ||*||*||*||||||||||||||| targets:684   UAUCCCCUCCAAUCCCCUCCGGGU   707 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   ||*||*||*||||||||||||||| targets:1564   UAUCCCCUCCAAUCCCCUCCGGGU   1587 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   ||*||*||*||||||||||||||| targets:1584   UAUCCCCUCCAAUCCCCUCCGGGU   1607 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   ||*||*||*||||||||||||||| targets:1608   UAUCCCCUCCAAUCCCCUCCGGGU   1631 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AUCGGAGAAGUUAGGGGAGGCCCA   1   ||*||*||*||||||||||||||| targets:1641   UAUCCCCUCCAAUCCCCUCCGGGU   1664 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget