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BaseInfo

ncRNA ID	novel_zma_miR5432
Species	Zea mays
Class	miRNA
Genome position	Chr3:207623342-207623409 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AUGCGACAAAUAAAAAAGAACGGA - 24
Stem-loop(if miRNA)	--       CGA     A      CC  GUUCAU   CGUUCUU   UAUUU UCGUAU  UA      U   |||||||   ||||| ||||||  ||   GCAAGAA   AUAAA AGCGUA  AU      U AG       AAA     C      AA  AAAAUU
Stem-loop sequence	CGUUCUUCGAUAUUUAUCGUAUCCUAGUUCAUUUUUAAAAUAAAAUGCGACAAAUAAAAAAGAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001149884.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||||||||||||||||| targets:1074   UCCGUUCUUUUUUAUUUGUCGCAU   1097 Target Full Sequence	0.0	Zea mays uncharacterized LOC100275979 (LOC100275979), mRNA	NA	coding protein	psRNATarget
EU959117.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||||||||||||||||| targets:1074   UCCGUUCUUUUUUAUUUGUCGCAU   1097 Target Full Sequence	0.0	Zea mays clone 210465 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT087358.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||||||||||||||||| targets:1048   UCCGUUCUUUUUUAUUUGUCGCAU   1071 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0053I03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674421.2	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=| targets:1318   UCCGUUCUUUUUUAUUUGUCGCGU   1341 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (pco128770), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018393.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=| targets:314   UCCGUUCUUUUUUAUUUGUCGCGU   337 Target Full Sequence	1.5	Zea mays clone EL01N0319H05.d mRNA sequence	NA	coding protein	psRNATarget
EU241931.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=| targets:659   UCCGUUCUUUUUUAUUUGUCGCGU   682 Target Full Sequence	1.5	Zea mays ZCN16 (ZCN16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112782.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=| targets:659   UCCGUUCUUUUUUAUUUGUCGCGU   682 Target Full Sequence	1.5	Zea mays ZCN16 protein (ZCN16), mRNA	NA	coding protein	psRNATarget
EU946974.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |=|||||||||||||||||||||| targets:839   UUCGUUCUUUUUUAUUUGUCGCAU   862 Target Full Sequence	0.0	Zea mays clone 325620 mRNA sequence	NA	coding protein	psRNATarget
XM_020552916.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||||||||||||||||* targets:1123   UCCGUUCUUUUUUAUUUGUCGCAG   1146 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654873 (LOC103654873), mRNA	NA	coding protein	psRNATarget
XM_020551665.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||=||||||||||||||||=|||| targets:2868   UCUGUUCUUUUUUAUUUGUUGCAU   2891 Target Full Sequence	1.5	PREDICTED: Zea mays Nuclear speckle RNA-binding protein A (LOC100382777), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540291.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:3105   UCCGUUCUUUUUUAUUUGUCGCGG   3128 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (pco092239), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018797.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:717   UCCGUUCUUUUUUAUUUGUCGCGG   740 Target Full Sequence	2.5	Zea mays clone EL01N0528E05.d mRNA sequence	NA	coding protein	psRNATarget
AY105561.2	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *|||||||||||||||||||||=| targets:455   CCCGUUCUUUUUUAUUUGUCGCGU   478 Target Full Sequence	1.5	Zea mays PCO089094 mRNA sequence	NA	coding protein	psRNATarget
EU965664.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *|||||||||||||||||||||=| targets:452   CCCGUUCUUUUUUAUUUGUCGCGU   475 Target Full Sequence	1.5	Zea mays clone 287791 heat shock factor-binding protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156616.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *|||||||||||||||||||||=| targets:452   CCCGUUCUUUUUUAUUUGUCGCGU   475 Target Full Sequence	1.5	Zea mays heat shock factor-binding protein 1 (LOC100283717), mRNA	NA	coding protein	psRNATarget
EZ108080.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:226   UCCGUUCUUUUUUAUUUGUCGCGG   249 Target Full Sequence	2.5	TSA: Zea mays contig43738, mRNA sequence	NA	coding protein	psRNATarget
EZ110245.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:85   UCCGUUCUUUUUUAUUUGUCGCGG   108 Target Full Sequence	2.5	TSA: Zea mays contig45905, mRNA sequence	NA	coding protein	psRNATarget
JB167475.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:1   UCCGUUCUUUUUUAUUUGUCGCGG   24 Target Full Sequence	2.5	Sequence 5139 from Patent EP2559767	NA	coding protein	psRNATarget
HI407014.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:1   UCCGUUCUUUUUUAUUUGUCGCGG   24 Target Full Sequence	2.5	Sequence 5139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239144.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||||=* targets:1   UCCGUUCUUUUUUAUUUGUCGCGG   24 Target Full Sequence	2.5	Sequence 5139 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667413.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||||||||*||| targets:1345   UCCGUUCUUUUUUAUUUGUCUCAU   1368 Target Full Sequence	1.5	PREDICTED: Zea mays polygalacturonase (LOC103644217), mRNA	NA	coding protein	psRNATarget
XM_008656682.2	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1558   CUCGUUCUUUUUUAUUUGUCGCGU   1581 Target Full Sequence	1.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656684.2	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1555   CUCGUUCUUUUUUAUUUGUCGCGU   1578 Target Full Sequence	1.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656685.2	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1552   CUCGUUCUUUUUUAUUUGUCGCGU   1575 Target Full Sequence	1.5	PREDICTED: Zea mays loricrin (LOC100281170), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU955808.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1560   CUCGUUCUUUUUUAUUUGUCGCGU   1583 Target Full Sequence	1.5	Zea mays clone 1547106 loricrin mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154089.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1560   CUCGUUCUUUUUUAUUUGUCGCGU   1583 Target Full Sequence	1.5	Zea mays loricrin (LOC100281170), mRNA	NA	coding protein	psRNATarget
BT063280.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:1533   CUCGUUCUUUUUUAUUUGUCGCGU   1556 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0047E08 mRNA, complete cds	NA	coding protein	psRNATarget
HI406859.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:3   CUCGUUCUUUUUUAUUUGUCGCGU   26 Target Full Sequence	1.5	Sequence 4984 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238989.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:3   CUCGUUCUUUUUUAUUUGUCGCGU   26 Target Full Sequence	1.5	Sequence 4984 from Patent EP2985353	NA	coding protein	psRNATarget
JB167320.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   *=||||||||||||||||||||=| targets:3   CUCGUUCUUUUUUAUUUGUCGCGU   26 Target Full Sequence	1.5	Sequence 4984 from Patent EP2559767	NA	coding protein	psRNATarget
BT018774.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||*||||||||||||=| targets:1588   UCCGUUCUUAUUUAUUUGUCGCGU   1611 Target Full Sequence	2.5	Zea mays clone EL01N0525H03.d mRNA sequence	NA	coding protein	psRNATarget
EU964772.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||*||||||||||||=| targets:1594   UCCGUUCUUAUUUAUUUGUCGCGU   1617 Target Full Sequence	2.5	Zea mays clone 281471 glucan endo-1,3-beta-glucosidase A6 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156343.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||*||||||||||||=| targets:1594   UCCGUUCUUAUUUAUUUGUCGCGU   1617 Target Full Sequence	2.5	Zea mays glucan endo-1,3-beta-glucosidase A6 (LOC100283442), mRNA	NA	coding protein	psRNATarget
BT063879.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||*||||||||||||=| targets:1225   UCCGUUCUUAUUUAUUUGUCGCGU   1248 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0115K10 mRNA, complete cds	NA	coding protein	psRNATarget
BT087307.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |||||||||*||||||||||||=| targets:869   UCCGUUCUUAUUUAUUUGUCGCGU   892 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0033L24 mRNA, complete cds	NA	coding protein	psRNATarget
EZ075380.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   ||||||||||||||*||||||||* targets:77   UCCGUUCUUUUUUAGUUGUCGCAG   100 Target Full Sequence	2.5	TSA: Zea mays contig11017, mRNA sequence	NA	coding protein	psRNATarget
XM_008654309.2	ncRNA:24   AG---GCAAGAAAAAAUAAACAGCGUA   1   ||---||||||||||||||||||*||| targets:659   UCGCACGUUCUUUUUUAUUUGUCACAU   685 Target Full Sequence	1.5	PREDICTED: Zea mays putative uncharacterized protein DDB_G0287975 (LOC103632541), mRNA	NA	coding protein	psRNATarget
EU967510.1	ncRNA:24   AG---GCAAGAAAAAAUAAACAGCGUA   1   ||---||||||||||||||||||*||| targets:603   UCGCACGUUCUUUUUUAUUUGUCACAU   629 Target Full Sequence	1.5	Zea mays clone 303920 mRNA sequence	NA	coding protein	psRNATarget
EZ088778.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |*|||||||||*|||||||||||| targets:97   UACGUUCUUUUCUAUUUGUCGCAU   120 Target Full Sequence	1.5	TSA: Zea mays contig24424, mRNA sequence	NA	coding protein	psRNATarget
BT018848.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |=|*||||||||||||||||||=* targets:2112   UUCUUUCUUUUUUAUUUGUCGCGG   2135 Target Full Sequence	2.5	Zea mays clone EL01N0555E10.d mRNA sequence	NA	coding protein	psRNATarget
EU953409.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |=|*||||||||||||||||||=* targets:2239   UUCUUUCUUUUUUAUUUGUCGCGG   2262 Target Full Sequence	2.5	Zea mays clone 1408899 nucleotide binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153645.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |=|*||||||||||||||||||=* targets:2239   UUCUUUCUUUUUUAUUUGUCGCGG   2262 Target Full Sequence	2.5	Zea mays nucleotide binding protein (LOC100280725), mRNA	NA	coding protein	psRNATarget
EU941665.1	ncRNA:24   AGGCAAGAAAAAAUAAACAGCGUA   1   |=|*||||||||||||||||||=* targets:22   UUCUUUCUUUUUUAUUUGUCGCGG   45 Target Full Sequence	2.5	Zea mays clone 1468926 mRNA sequence	NA	coding protein	psRNATarget