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BaseInfo

ncRNA ID novel_zma_miR5430
Species Zea mays
Class miRNA
Genome position Chr4:60691865-60691962 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 75 - AAUCCAUAUGGAUUGUAGGGGAUU - 98
Stem-loop(if miRNA) --               UA         UAUGGAUUGGA    A   UG -   A
  AAUCCAUAUGGAUUG  GGGGAUUGA           GGGG UUU  A CUU C
  |||||||||||||||  |||||||||           |||| |||  | |||
  UUAGGUAUACCUAAC  CCCCUAACU           CCCC AAA  U GGG U
GG               UC         -----------    C   GU A   A
Stem-loop sequence AAUCCAUAUGGAUUGUAGGGGAUUGAUAUGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT055069.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001

1.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:303   AAUCCCCUCCAAUCCAUAUGGAUU   326

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1632   AAUCCCCUCCAAUCCAUAUGGAUU   1655

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005

1.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1982   AAUCCCCUCCAAUCCAUAUGGAUU   2005

1.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:24   AAUCCCCUCCAAUCCAUAUGGAUU   47

1.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522

1.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522

1.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508

1.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490

1.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446

1.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1200   AAUCCCCUCCAAUCCAUAUGGAUU   1223

1.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT055467.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|=|||||||||||||
targets:1087   AAUCCCCUCCGAUCCAUAUGGAUU   1110

2.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:1162   AAUCCCCUCCAAUCCAUAUGGAUU   1185

1.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|=|||||||||||||
targets:1049   AAUCCCCUCCGAUCCAUAUGGAUU   1072

2.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:919   AAUCCCCUCCAAUCCAUAUGGAUU   942

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU959345.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:847   AAUCCCCUCCAAUCCAUAUGGAUU   870

1.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869

1.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:846   AAUCCCCUCCAAUCCAUAUGGAUU   869

1.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:848   AAUCCCCUCCAAUCCAUAUGGAUU   871

1.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:900   AAUCCCCUCCAAUCCAUAUGGAUU   923

1.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:701   AAUCCCCUCCAAUCCAUAUGGAUU   724

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||||||||||
targets:447   AAUCCCCUCCAAUCCAUAUGGAUU   470

1.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||=|||*|||||||||||||||
targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145

1.0 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
BT055765.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||=|*|||||||||||||||
targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346

2.0 Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds NA coding protein psRNATarget
NM_001153131.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||=|*|||||||||||||||
targets:2323   AAUCCCUUCCAAUCCAUAUGGAUU   2346

2.0 Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  =|||||||*|||||||||||||||
targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723

1.0 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
BT024027.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||=|*|||||||||||||||
targets:1645   AAUCCCUUCCAAUCCAUAUGGAUU   1668

2.0 Zea mays clone EL01N0420G12 mRNA sequence NA coding protein psRNATarget
EU953075.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||=|||*|||||||||||||||
targets:1010   AAUCUCCUCCAAUCCAUAUGGAUU   1033

1.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||=|*|||||||||||||||
targets:838   AAUCCCUUCCAAUCCAUAUGGAUU   861

2.0 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EZ075586.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||=|=*|||||||||||||||||
targets:36   AAUUCUAUACAAUCCAUAUGGAUU   59

2.0 TSA: Zea mays contig11223, mRNA sequence NA coding protein psRNATarget
XM_020545025.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||=|||*||||||||||||||*
targets:337   AAUCUCCUCCAAUCCAUAUGGAUG   360

2.0 PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:1971   AAUCCCCCUCAAUCCAUAUGGAUU   1994

2.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1889   GGUUAUUUUCAAUCCAUAUGGAUU   1912

3.0 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:608   AAUCCCCCUCAAUCCAUAUGGAUU   631

2.0 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT068463.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:1211   AAUCCCCCUCAAUCCAUAUGGAUU   1234

2.0 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:851   AAUCCCCCUCAAUCCAUAUGGAUU   874

2.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:769   GGUUAUUUUCAAUCCAUAUGGAUU   792

3.0 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962

2.0 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
EU972032.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962

2.0 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT068594.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:909   AAUCCCCCUCAAUCCAUAUGGAUU   932

2.0 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:912   AAUCCCCCUCAAUCCAUAUGGAUU   935

2.0 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:372   AAUCCCCCUCAAUCCAUAUGGAUU   395

2.0 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
JB170278.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105

2.0 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
HI409817.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105

2.0 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
LQ241947.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  |||||||**|||||||||||||||
targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105

2.0 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
JB166898.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||*|||||||
targets:76   AAUCCCCUCCAAUCCACAUGGAUU   99

2.5 Sequence 4562 from Patent EP2559767 NA coding protein psRNATarget
LQ238567.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||*|||||||
targets:76   AAUCCCCUCCAAUCCACAUGGAUU   99

2.5 Sequence 4562 from Patent EP2985353 NA coding protein psRNATarget
HI406437.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||||||*|||||||*|||||||
targets:76   AAUCCCCUCCAAUCCACAUGGAUU   99

2.5 Sequence 4562 from Patent EP2074227 NA coding protein psRNATarget
NM_001138093.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1528   GGUUAUUUUCAAUCCAUAUGGAUU   1551

3.0 Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA NA coding protein psRNATarget
BT035012.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1528   GGUUAUUUUCAAUCCAUAUGGAUU   1551

3.0 Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds NA coding protein psRNATarget
HI408824.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24

3.0 Sequence 6949 from Patent EP2074227 NA coding protein psRNATarget
LQ240954.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24

3.0 Sequence 6949 from Patent EP2985353 NA coding protein psRNATarget
JB169285.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:1   GGUUAUUUUCAAUCCAUAUGGAUU   24

3.0 Sequence 6949 from Patent EP2559767 NA coding protein psRNATarget
EZ101759.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:23   GGUUAUUUUCAAUCCAUAUGGAUU   46

3.0 TSA: Zea mays contig37415, mRNA sequence NA coding protein psRNATarget
NM_001150851.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||==*|*|||||||||||||||
targets:878   AAUCUUGUCCAAUCCAUAUGGAUU   901

3.0 Zea mays uncharacterized LOC100277218 (cl4730_1), mRNA NA coding protein psRNATarget
EU967408.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||==*|*|||||||||||||||
targets:878   AAUCUUGUCCAAUCCAUAUGGAUU   901

3.0 Zea mays clone 302604 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY110728.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||==*|*|||||||||||||||
targets:414   AAUCUUGUCCAAUCCAUAUGGAUU   437

3.0 Zea mays CL4730_1 mRNA sequence NA coding protein psRNATarget
EU965203.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||*|||*||||||||||*||||
targets:890   AAUCACCUCCAAUCCAUAUAGAUU   913

2.5 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ||||*|||*||||||||||*||||
targets:890   AAUCACCUCCAAUCCAUAUAGAUU   913

2.5 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
BT018999.1
ncRNA:24   UUAGGGGAUGUUAGGUAUACCUAA   1
  ==|=*==|*|||||||||||||||
targets:385   GGUUAUUUUCAAUCCAUAUGGAUU   408

3.0 Zea mays clone Contig487.F mRNA sequence NA coding protein psRNATarget
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