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BaseInfo

ncRNA ID novel_zma_miR5425
Species Zea mays
Class miRNA
Genome position Chr2:74091860-74092039 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 21
Mature sequence(if miRNA) 160 - UGGGCAAAGAAGUACAUCCAU - 180
Stem-loop(if miRNA) --A          A  C           A         U   G  G           C           A   -     UU       AU
   GGUGUACUUC UU CCUAUUCUACC UUGUAUAAA UUU AA UUUAAAUUCAU AUAUGUUAAGA AUA AAAAA  GAAAAUU  C
   |||||||||| || ||||||||||| ||||||||| ||| || ||||||||||| ||||||||||| ||| |||||  |||||||  U
   CUACAUGAAG AA GGGUGAGAUGG AACAUAUUU AAA UU AAGUUUAAGUA UAUAUAAUUUU UAU UUUUU  CUUUUAA  C
UAC          A  C           C         U   G  A           A           C   G     UU       GA
Stem-loop sequence AGGUGUACUUCAUUCCCUAUUCUACCAUUGUAUAAAUUUUGAAGUUUAAAUUCAUCAUAUGUUAAGAAAUAAAAAAUUGAAAAUUAUCUCAGAAUUUUCUUUUUUUGUAUCUUUUAAUAUAUAAUGAAUUUGAAAUUGAAAUUUUAUACAACGGUAGAGUGGGCAAAGAAGUACAUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668391.2
ncRNA:21   UACCUACAUGAAGAAACGGGU   1
  *||||||*|||||||||||*|
targets:266   CUGGAUGAACUUCUUUGCCGA   286

2.5 PREDICTED: Zea mays la-related protein 6C (LOC103645318), mRNA NA coding protein psRNATarget