ncRNA ID | novel_zma_miR5425 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:74091860-74092039 [+] |
Reference genome | RefGen_v4 |
Source | SRR2287165 |
Length | 21 |
Mature sequence(if miRNA) | 160 - UGGGCAAAGAAGUACAUCCAU - 180 |
Stem-loop(if miRNA) |
--A          A  C           A         U   G  G           C           A   -     UU       AU    GGUGUACUUC UU CCUAUUCUACC UUGUAUAAA UUU AA UUUAAAUUCAU AUAUGUUAAGA AUA AAAAA  GAAAAUU  C    |||||||||| || ||||||||||| ||||||||| ||| || ||||||||||| ||||||||||| ||| |||||  |||||||  U    CUACAUGAAG AA GGGUGAGAUGG AACAUAUUU AAA UU AAGUUUAAGUA UAUAUAAUUUU UAU UUUUU  CUUUUAA  C UAC          A  C           C         U   G  A           A           C   G     UU       GA |
Stem-loop sequence | AGGUGUACUUCAUUCCCUAUUCUACCAUUGUAUAAAUUUUGAAGUUUAAAUUCAUCAUAUGUUAAGAAAUAAAAAAUUGAAAAUUAUCUCAGAAUUUUCUUUUUUUGUAUCUUUUAAUAUAUAAUGAAUUUGAAAUUGAAAUUUUAUACAACGGUAGAGUGGGCAAAGAAGUACAUCCAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008668391.2 |
|
2.5 | PREDICTED: Zea mays la-related protein 6C (LOC103645318), mRNA | NA | coding protein | psRNATarget |