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BaseInfo

ncRNA ID novel_zma_miR5417
Species Zea mays
Class miRNA
Genome position Chr2:12489109-12489160 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 29 - GGUGCUCUCUGGCCAGGCGCGGAC - 52
Stem-loop(if miRNA) --      C  UG      -     A
  GGUGCU UC  GCCAGG CGCGG C
  |||||| ||  |||||| ||||| G
  CUACGA AG  CGGUCC GUGCC G
AU      A  UG      A     U
Stem-loop sequence GGUGCUCUCUGGCCAGGCGCGGACGGUCCGUGACCUGGCGUGAAAGCAUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ096610.1
ncRNA:24   CAGGCGCGGACCGGUCUCUCGUGG   1
  |||||||=|||*||||||||||||
targets:29   GUCCGCGUCUGACCAGAGAGCACC   52

2.5 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget