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BaseInfo

ncRNA ID	novel_zma_miR5416
Species	Zea mays
Class	miRNA
Genome position	Chr2:18155081-18155153 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - CGACAACUAAAACGAAACAGAGGG - 24
Stem-loop(if miRNA)	---     U                     U AA CCC   GUUUC UUUUAGUUGUCGCUGGAUAGU G  U |||   ||||| ||||||||||||||||||||| |  U GGG   CAAAG AAAAUCAACAGCGACCUAUCA C  U    AGA     C                     - GU
Stem-loop sequence	CCCGUUUCUUUUUAGUUGUCGCUGGAUAGUUGAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACAGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551485.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||||||||||||||||||||| targets:2532   CCCUCUGUUUCGUUUUAGUUGUCG   2555 Target Full Sequence	0.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:7   CCCUCCGUUUCGUUUUAGUUGUCG   30 Target Full Sequence	1.0	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:7   CCCUCCGUUUCGUUUUAGUUGUCG   30 Target Full Sequence	1.0	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:7   CCCUCCGUUUCGUUUUAGUUGUCG   30 Target Full Sequence	1.0	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
HI407269.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
JB167730.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239341.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5336 from Patent EP2985353	NA	coding protein	psRNATarget
JB167672.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5336 from Patent EP2559767	NA	coding protein	psRNATarget
HI407211.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5336 from Patent EP2074227	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:10   CCCUCCGUUUCGUUUUAGUUGUCG   33 Target Full Sequence	1.0	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:575   CCCUCCGUUUCGUUUUAGUUGUCG   598 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:839   CCCUCCGUUUCGUUUUAGUUGUCG   862 Target Full Sequence	1.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:839   CCCUCCGUUUCGUUUUAGUUGUCG   862 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1028   CCCUCCGUUUCGUUUUAGUUGUCG   1051 Target Full Sequence	1.0	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:916   CCCUCCGUUUCGUUUUAGUUGUCG   939 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1166   CCCUCCGUUUCGUUUUAGUUGUCG   1189 Target Full Sequence	1.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549872.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1269   CCCUCCGUUUCGUUUUAGUUGUCG   1292 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175582.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1436   CCCUCCGUUUCGUUUUAGUUGUCG   1459 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA	NA	coding protein	psRNATarget
BT065656.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1436   CCCUCCGUUUCGUUUUAGUUGUCG   1459 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1519   CCCUCCGUUUCGUUUUAGUUGUCG   1542 Target Full Sequence	1.0	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||||||||||||||| targets:1519   CCCUCCGUUUCGUUUUAGUUGUCG   1542 Target Full Sequence	1.0	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   GGGAGA--CAAAGCAAAAUCAACAGC   1   |=||||--|||||||||||||||||| targets:2115   CUCUCUCCGUUUCGUUUUAGUUGUCG   2140 Target Full Sequence	2.5	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   GGGAGA--CAAAGCAAAAUCAACAGC   1   |=||||--|||||||||||||||||| targets:2115   CUCUCUCCGUUUCGUUUUAGUUGUCG   2140 Target Full Sequence	2.5	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
JB170512.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||||=*|||||||||||||||||| targets:5   CCCUUCGUUUCGUUUUAGUUGUCG   28 Target Full Sequence	1.0	Sequence 8176 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242181.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||||=*|||||||||||||||||| targets:5   CCCUUCGUUUCGUUUUAGUUGUCG   28 Target Full Sequence	1.0	Sequence 8176 from Patent EP2985353	NA	coding protein	psRNATarget
HI410051.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||||=*|||||||||||||||||| targets:5   CCCUUCGUUUCGUUUUAGUUGUCG   28 Target Full Sequence	1.0	Sequence 8176 from Patent EP2074227	NA	coding protein	psRNATarget
EZ065373.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||=||*|||||||||||||||||| targets:282   CCUUCCGUUUCGUUUUAGUUGUCG   305 Target Full Sequence	1.0	TSA: Zea mays contig01006, mRNA sequence	NA	coding protein	psRNATarget
EU957363.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=|||||||||*|||||||||||| targets:471   CUCUCUGUUUCUUUUUAGUUGUCG   494 Target Full Sequence	1.5	Zea mays clone 1589847 mRNA sequence	NA	coding protein	psRNATarget
EU945792.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   =||||*|||||||||||||||||| targets:1182   UCCUCCGUUUCGUUUUAGUUGUCG   1205 Target Full Sequence	1.0	Zea mays clone 285684 mRNA sequence	NA	coding protein	psRNATarget
EU964554.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   =||||*|||||||||||||||||| targets:1331   UCCUCCGUUUCGUUUUAGUUGUCG   1354 Target Full Sequence	1.0	Zea mays clone 279840 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352327.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||=||||||||*|||||||||||| targets:2673   CCUUCUGUUUCUUUUUAGUUGUCG   2696 Target Full Sequence	1.5	Zea mays delta-1-pyrroline-5-carboxylate synthase-like (LOC103630430), mRNA	NA	coding protein	psRNATarget
HI406357.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ==|||||||||*|||||||||||| targets:2   UUCUCUGUUUCUUUUUAGUUGUCG   25 Target Full Sequence	1.5	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
JB166818.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ==|||||||||*|||||||||||| targets:2   UUCUCUGUUUCUUUUUAGUUGUCG   25 Target Full Sequence	1.5	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ==|||||||||*|||||||||||| targets:2   UUCUCUGUUUCUUUUUAGUUGUCG   25 Target Full Sequence	1.5	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   =|=||*|||||||||||||||||| targets:1337   UCUUCCGUUUCGUUUUAGUUGUCG   1360 Target Full Sequence	1.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:23   GGAGACAAAGCAAAAUCAACAGC   1   ||||*||||=||||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGUCG   23 Target Full Sequence	2.0	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
JB170144.1	ncRNA:23   GGAGACAAAGCAAAAUCAACAGC   1   ||||*||||=||||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGUCG   23 Target Full Sequence	2.0	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
HI409683.1	ncRNA:23   GGAGACAAAGCAAAAUCAACAGC   1   ||||*||||=||||||||||||| targets:1   CCUCCGUUUUGUUUUAGUUGUCG   23 Target Full Sequence	2.0	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:10   CCCUCCGUUUCUUUUUAGUUGUCG   33 Target Full Sequence	2.5	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
JB167731.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:10   CCCUCCGUUUCUUUUUAGUUGUCG   33 Target Full Sequence	2.5	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
HI407270.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:10   CCCUCCGUUUCUUUUUAGUUGUCG   33 Target Full Sequence	2.5	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:15   CCCUCCGUUUCUUUUUAGUUGUCG   38 Target Full Sequence	2.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
EU952581.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||||||*||||*|||||||||||| targets:465   CCCUCUAUUUCUUUUUAGUUGUCG   488 Target Full Sequence	2.5	Zea mays clone 1283791 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149050.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||||||*||||*|||||||||||| targets:465   CCCUCUAUUUCUUUUUAGUUGUCG   488 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100274760), mRNA	NA	coding protein	psRNATarget
EZ112557.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:52   CCCUCCGUUUCUUUUUAGUUGUCG   75 Target Full Sequence	2.5	TSA: Zea mays contig48218, mRNA sequence	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1141   CCCUCCGUUUCUUUUUAGUUGUCG   1164 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
EU953599.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1229   CCCUCCGUUUCUUUUUAGUUGUCG   1252 Target Full Sequence	2.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1224   CCCUCCGUUUCUUUUUAGUUGUCG   1247 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1239   CCCUCCGUUUCUUUUUAGUUGUCG   1262 Target Full Sequence	2.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1253   CCCUCCGUUUCUUUUUAGUUGUCG   1276 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1305   CCCUCCGUUUCUUUUUAGUUGUCG   1328 Target Full Sequence	2.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1307   CCCUCCGUUUCUUUUUAGUUGUCG   1330 Target Full Sequence	2.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1413   CCCUCCGUUUCUUUUUAGUUGUCG   1436 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1155   CCCUCCGUUUCUUUUUAGUUGUCG   1178 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2002   CCCUCCGUUUCUUUUUAGUUGUCG   2025 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2033   CCCUCCGUUUCUUUUUAGUUGUCG   2056 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2061   CCCUCCGUUUCUUUUUAGUUGUCG   2084 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2115   CCCUCCGUUUCUUUUUAGUUGUCG   2138 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2146   CCCUCCGUUUCUUUUUAGUUGUCG   2169 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:1456   CCCUCCGUUUCUUUUUAGUUGUCG   1479 Target Full Sequence	2.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2209   CCCUCCGUUUCUUUUUAGUUGUCG   2232 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2209   CCCUCCGUUUCUUUUUAGUUGUCG   2232 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2209   CCCUCCGUUUCUUUUUAGUUGUCG   2232 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2230   CCCUCCGUUUCUUUUUAGUUGUCG   2253 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2230   CCCUCCGUUUCUUUUUAGUUGUCG   2253 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2230   CCCUCCGUUUCUUUUUAGUUGUCG   2253 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2209   CCCUCCGUUUCUUUUUAGUUGUCG   2232 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2168   CCCUCCGUUUCUUUUUAGUUGUCG   2191 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2223   CCCUCCGUUUCUUUUUAGUUGUCG   2246 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2248   CCCUCCGUUUCUUUUUAGUUGUCG   2271 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2209   CCCUCCGUUUCUUUUUAGUUGUCG   2232 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||||*|||||*|||||||||||| targets:2147   CCCUCCGUUUCUUUUUAGUUGUCG   2170 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
EU953133.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=||=||||||*|||||||||||* targets:1150   CUCUUUGUUUCUUUUUAGUUGUCU   1173 Target Full Sequence	2.5	Zea mays clone 1385620 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153573.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=||=||||||*|||||||||||* targets:1150   CUCUUUGUUUCUUUUUAGUUGUCU   1173 Target Full Sequence	2.5	Zea mays protein binding protein (LOC100280655), mRNA	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||-|*|||||||||||||||||| targets:1   CCC-CCGUUUCGUUUUAGUUGUCG   23 Target Full Sequence	1.0	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
JB166581.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||-|*|||||||||||||||||| targets:1   CCC-CCGUUUCGUUUUAGUUGUCG   23 Target Full Sequence	1.0	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
HI406120.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |||-|*|||||||||||||||||| targets:1   CCC-CCGUUUCGUUUUAGUUGUCG   23 Target Full Sequence	1.0	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
HI405918.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=||||*|||||||||||||*||| targets:2   CUCUCUUUUUCGUUUUAGUUAUCG   25 Target Full Sequence	2.5	Sequence 4043 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238048.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=||||*|||||||||||||*||| targets:2   CUCUCUUUUUCGUUUUAGUUAUCG   25 Target Full Sequence	2.5	Sequence 4043 from Patent EP2985353	NA	coding protein	psRNATarget
JB166379.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |=||||*|||||||||||||*||| targets:2   CUCUCUUUUUCGUUUUAGUUAUCG   25 Target Full Sequence	2.5	Sequence 4043 from Patent EP2559767	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ||*||*||||=||||||||||||| targets:311   CCAUCCGUUUUGUUUUAGUUGUCG   334 Target Full Sequence	2.0	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
EZ080914.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   |*|||*|||||||||||*|||||| targets:112   CACUCCGUUUCGUUUUAAUUGUCG   135 Target Full Sequence	2.5	TSA: Zea mays contig16553, mRNA sequence	NA	coding protein	psRNATarget
EU957761.1	ncRNA:24   GGGAGACAAAGCAAAAUCAACAGC   1   ==*||*||||=||||||||||||| targets:296   UUAUCCGUUUUGUUUUAGUUGUCG   319 Target Full Sequence	2.0	Zea mays clone 1614826 mRNA sequence	NA	coding protein	psRNATarget